CuGenDBv2

Gene ID	Cmc08g0224941
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr08:15432655..15433935
RNA-Seq Expression	Cmc08g0224941
Synteny	Cmc08g0224941
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026271.1 pol protein [Cucumis melo var. makuwa]

1.8e-207

89.31

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA
         RPSTVSEVRSFLGLA                        APFVW KACEDSFQNLKQKLVTAP+LTV DGSGS VIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIF DHKSLKYFFT KELNMRQ+RWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH
        QA LHRDLERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQ NDPYLVEKR LAEAGQAVEFS+SSDGGLLFERCLCVPSDSA KTELLSEAHSSPFSMH
Subjt:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSRKMYQDLKRVYWWRNMKR
        PGS KMYQDLKRVYWWRNMKR
Subjt:  PGSRKMYQDLKRVYWWRNMKR

KAA0037244.1 reverse transcriptase [Cucumis melo var. makuwa]

2.3e-207

89.55

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKF KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA
         RPSTVSEVRSFLGLA                        APFVW KACEDSFQNLKQKLVTAP+LTV DGSGS VIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIF DHKSLKYFFT KELNMRQ+RWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH
        QA LHRDLERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAE GQAVEFS+SSDGGLLFER LCVPSDSA+KTELLSEAHSSPFSMH
Subjt:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSRKMYQDLKRVYWWRNMKR
        PGS KMYQDLKRVYWWRNMKR
Subjt:  PGSRKMYQDLKRVYWWRNMKR

KAA0045414.1 pol protein [Cucumis melo var. makuwa]

1.2e-211

97.94

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLAAPFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFA
        PRPSTVSE+       APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFA
Subjt:  PRPSTVSEVRSFLGLAAPFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFA

Query:  LKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQASLHRDLERAEIAVSVGAVSMQL
        LKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQASLHRDLERAEIAVSVGAVSMQL
Subjt:  LKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQASLHRDLERAEIAVSVGAVSMQL

Query:  AQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSRKMYQDLKRV
        AQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSRKMYQDLKRV
Subjt:  AQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSRKMYQDLKRV

KAA0046185.1 pol protein [Cucumis melo var. makuwa]

3.0e-207

89.55

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGH+VSKAGVSVDPAKIEAVT  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA
         RPSTVSEVRSFLGLA                        APFVW KACEDSFQNLKQKLVTAP+LTV DGSGS VIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIF DHKSLKYFFT KELNMRQ+RWLELVKDYDCEILYHPGKANVV DALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH
        QA LHRDLERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFER LCVPSDSAVKTELLSEAHSSPFSMH
Subjt:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSRKMYQDLKRVYWWRNMKR
        PGS KMYQDLKRVYWWRNMKR
Subjt:  PGSRKMYQDLKRVYWWRNMKR

KAA0057672.1 pol protein [Cucumis melo var. makuwa]

1.0e-207

89.55

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA
         RPSTVSEVRSFLGLA                        APFVW KACEDSFQNLKQKLVTAP+LTV DGSGS VIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIF DHKSLKYFFT KELNMRQ+RWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH
        QA LHRDLERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFER LCVPSDSAVKTELL+EAHSSPFSMH
Subjt:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSRKMYQDLKRVYWWRNMKR
        PGS KMYQDLKR+YWWRNMKR
Subjt:  PGSRKMYQDLKRVYWWRNMKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPZ2 Pol protein

8.6e-208

89.31

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA
         RPSTVSEVRSFLGLA                        APFVW KACEDSFQNLKQKLVTAP+LTV DGSGS VIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIF DHKSLKYFFT KELNMRQ+RWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH
        QA LHRDLERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQ NDPYLVEKR LAEAGQAVEFS+SSDGGLLFERCLCVPSDSA KTELLSEAHSSPFSMH
Subjt:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSRKMYQDLKRVYWWRNMKR
        PGS KMYQDLKRVYWWRNMKR
Subjt:  PGSRKMYQDLKRVYWWRNMKR

A0A5A7T190 Reverse transcriptase

1.1e-207

89.55

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKF KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA
         RPSTVSEVRSFLGLA                        APFVW KACEDSFQNLKQKLVTAP+LTV DGSGS VIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIF DHKSLKYFFT KELNMRQ+RWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH
        QA LHRDLERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAE GQAVEFS+SSDGGLLFER LCVPSDSA+KTELLSEAHSSPFSMH
Subjt:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSRKMYQDLKRVYWWRNMKR
        PGS KMYQDLKRVYWWRNMKR
Subjt:  PGSRKMYQDLKRVYWWRNMKR

A0A5A7TQM3 Reverse transcriptase

5.8e-212

97.94

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLAAPFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFA
        PRPSTVSE+       APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFA
Subjt:  PRPSTVSEVRSFLGLAAPFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFA

Query:  LKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQASLHRDLERAEIAVSVGAVSMQL
        LKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQASLHRDLERAEIAVSVGAVSMQL
Subjt:  LKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQASLHRDLERAEIAVSVGAVSMQL

Query:  AQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSRKMYQDLKRV
        AQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSRKMYQDLKRV
Subjt:  AQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSRKMYQDLKRV

A0A5A7TXM6 Reverse transcriptase

1.5e-207

89.55

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGH+VSKAGVSVDPAKIEAVT  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA
         RPSTVSEVRSFLGLA                        APFVW KACEDSFQNLKQKLVTAP+LTV DGSGS VIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIF DHKSLKYFFT KELNMRQ+RWLELVKDYDCEILYHPGKANVV DALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH
        QA LHRDLERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFER LCVPSDSAVKTELLSEAHSSPFSMH
Subjt:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSRKMYQDLKRVYWWRNMKR
        PGS KMYQDLKRVYWWRNMKR
Subjt:  PGSRKMYQDLKRVYWWRNMKR

A0A5A7UP94 Pol protein

5.1e-208

89.55

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT  
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA
         RPSTVSEVRSFLGLA                        APFVW KACEDSFQNLKQKLVTAP+LTV DGSGS VIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLA------------------------APFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        SRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIF DHKSLKYFFT KELNMRQ+RWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH
        QA LHRDLERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFER LCVPSDSAVKTELL+EAHSSPFSMH
Subjt:  QASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSRKMYQDLKRVYWWRNMKR
        PGS KMYQDLKR+YWWRNMKR
Subjt:  PGSRKMYQDLKRVYWWRNMKR

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.4e-45

36.9

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+   
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGL--------------AAPFVWC-----------KACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAY
        P P+   E+++FLGL              A P   C              + +F+ LK  +   PIL V D +    + +DAS   LG VL Q G  ++Y
Subjt:  PRPSTVSEVRSFLGL--------------AAPFVWC-----------KACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSR
         SR L  HE NY T + EL A+V+A K +RHYL G   +I  DH+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR
Subjt:  ASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSR

P0CT34 Transposon Tf2-1 polyprotein

7.9e-41

28.47

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V   
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLG--------------LAAP----------FVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGK-----
         +P    E+R FLG              L  P          + W      + +N+KQ LV+ P+L   D S   ++ +DAS   +G VL Q+       
Subjt:  PRPSTVSEVRSFLG--------------LAAP----------FVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYG--EKIQIFMDHKSLKYFFTHKE--LNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKV
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I  DH++L    T++    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYG--EKIQIFMDHKSLKYFFTHKE--LNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHSAALITRQASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLF--ERCLCVPSDSAVKTELL
             ++     + +D E   I          + Q+++    + +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++
Subjt:  SHSAALITRQASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLF--ERCLCVPSDSAVKTELL

Query:  SEAHSSPFSMHPGSRKMYQDLKRVYWWRNMKR
         + H     +HPG   +   + R + W+ +++
Subjt:  SEAHSSPFSMHPGSRKMYQDLKRVYWWRNMKR

P0CT35 Transposon Tf2-2 polyprotein

7.9e-41

28.47

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V   
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLG--------------LAAP----------FVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGK-----
         +P    E+R FLG              L  P          + W      + +N+KQ LV+ P+L   D S   ++ +DAS   +G VL Q+       
Subjt:  PRPSTVSEVRSFLG--------------LAAP----------FVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYG--EKIQIFMDHKSLKYFFTHKE--LNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKV
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I  DH++L    T++    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYG--EKIQIFMDHKSLKYFFTHKE--LNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHSAALITRQASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLF--ERCLCVPSDSAVKTELL
             ++     + +D E   I          + Q+++    + +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++
Subjt:  SHSAALITRQASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLF--ERCLCVPSDSAVKTELL

Query:  SEAHSSPFSMHPGSRKMYQDLKRVYWWRNMKR
         + H     +HPG   +   + R + W+ +++
Subjt:  SEAHSSPFSMHPGSRKMYQDLKRVYWWRNMKR

P0CT41 Transposon Tf2-12 polyprotein

7.9e-41

28.47

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V   
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLG--------------LAAP----------FVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGK-----
         +P    E+R FLG              L  P          + W      + +N+KQ LV+ P+L   D S   ++ +DAS   +G VL Q+       
Subjt:  PRPSTVSEVRSFLG--------------LAAP----------FVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYG--EKIQIFMDHKSLKYFFTHKE--LNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKV
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I  DH++L    T++    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYG--EKIQIFMDHKSLKYFFTHKE--LNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHSAALITRQASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLF--ERCLCVPSDSAVKTELL
             ++     + +D E   I          + Q+++    + +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++
Subjt:  SHSAALITRQASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLAEAGQAVEFSISSDGGLLF--ERCLCVPSDSAVKTELL

Query:  SEAHSSPFSMHPGSRKMYQDLKRVYWWRNMKR
         + H     +HPG   +   + R + W+ +++
Subjt:  SEAHSSPFSMHPGSRKMYQDLKRVYWWRNMKR

P20825 Retrovirus-related Pol polyprotein from transposon 297

4.8e-46

36.9

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC
        M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S 
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSC

Query:  PRPSTVSEVRSFLGL--------------AAPFVWCKACE-----------DSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAY
        P P+   E+R+FLGL              A P   C               ++F+ LK  ++  PIL + D     V+ +DAS   LG VL Q G  +++
Subjt:  PRPSTVSEVRSFLGL--------------AAPFVWCKACE-----------DSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSR
         SR L  HE NY   + EL A+V+A K +RHYL G +  I  DH+ L++    KE   + +RW   + +Y  +I Y  GK N VADALSR
Subjt:  ASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHKSLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.1e-12

33.06

Show/hide

Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSCPRPSTVSEVRSFLGLAAPF-----------------------VWC
        HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+   P P   +E+R FLGL   +                        W 
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSCPRPSTVSEVRSFLGLAAPF-----------------------VWC

Query:  KACEDSFQNLKQKLVTAPILTVSD
        +    +F+ LK  + T P+L + D
Subjt:  KACEDSFQNLKQKLVTAPILTVSD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTTTGGGTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAATAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGACATCTTGAT
ATATTCCAAGACGGAGGTCGAGCATGAGGAACATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATTGTATGCTAAGTTCTCGAAATGCGAGTTTTGGCTGAAGC
AGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGTCCCCGACCTTCCACAGTCAGTGAGGTTCGT
AGCTTTCTGGGTTTAGCAGCTCCTTTCGTTTGGTGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGATTCTTACTGTATCTGATGG
TTCTGGCAGTTCTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATG
AGCAGAATTACCCTACACATGATTTAGAGTTGGCAGCAATGGTTTTTGCATTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCATGGATCATAAG
AGCTTGAAATACTTCTTTACTCATAAGGAATTGAATATGAGACAGCAAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAA
TGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCTCATTGCATCGAGATCTTGAGAGGGCTGAGATTGCAGTGTCAGTAG
GGGCAGTCTCTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAAGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCA
GAGGCAGGACAAGCTGTTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGGTGTCTCTGTGTGCCATCAGATAGTGCGGTTAAAACAGAATTATTATCTGA
GGCCCATAGTTCCCCATTTTCCATGCACCCGGGTAGTAGGAAGATGTATCAAGACCTGAAGCGGGTTTATTGGTGGCGTAATATGAAGAGAGGTGGCAGAATTTGTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSCPRPSTVSEVR
SFLGLAAPFVWCKACEDSFQNLKQKLVTAPILTVSDGSGSSVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFMDHK
SLKYFFTHKELNMRQQRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQASLHRDLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKRGLA
EAGQAVEFSISSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSRKMYQDLKRVYWWRNMKRGGRIC

Cmc08g0224941 (gene) of Melon (Charmono) v1.1 genome