; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0224961 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0224961
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr08:15463531..15464034
RNA-Seq ExpressionCmc08g0224961
SyntenyCmc08g0224961
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045419.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.4e-8398.76Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTS
        QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPR++
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTS

KAA0054435.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.6e-7788.55Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGER YS+GETDKTLFI+RT T+L++AQIYVDDIIFGGFPKTLV+NFINIMKSEFEMSLVGELSCFL LQIKQ SEGMFISQEKY KNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        QHKRTP  THAKITK+MVGTEVDHKLYRSMIGSLLYLT SRPDIAY VGICARYQSD RTSHLN +
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

KAA0054623.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.2e-7486.75Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGERGYS+GETDKTL I+RT TDL++AQIYVDDIIFGGFPKTLV NFINIM SEFEMSLVGELSCFL LQIKQ SEGMF+SQEKY KNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        Q+KRTP ATHAKITK+ VGT VDHKLYRSMIGS LYL ASRPDIAYAV ICARYQSDP TSHLN V
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

TYK08856.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.8e-7689.16Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGERGYS GE DKTLFI+RT TDL++ QIYVDDIIFGGF KTLV+NFINIMKSEFEMSLVGELSCFL LQIKQ SEGMFISQEKY KNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        QHKRT VATHAKITK+MVGTEVDHKLYRSMI SLLYLTASRPDIAYAVGICA+YQS+PRTSHLN V
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

XP_016901806.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]7.2e-7890.36Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGERGYS+GE DKTLFI+RT TDL++ QIYVDDIIFGGFPKTLV+NFINIMKSEFEMSLVGELSCFL LQIKQ SEGMFISQEKY KNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        QHKRT VATHAKITK+MVGTEVDHKLYRSMI SLLYLTASRPDIAYAVGICA+YQSDPRTSHLN V
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

TrEMBL top hitse value%identityAlignment
A0A1S4E0Q2 uncharacterized mitochondrial protein AtMg00810-like3.5e-7890.36Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGERGYS+GE DKTLFI+RT TDL++ QIYVDDIIFGGFPKTLV+NFINIMKSEFEMSLVGELSCFL LQIKQ SEGMFISQEKY KNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        QHKRT VATHAKITK+MVGTEVDHKLYRSMI SLLYLTASRPDIAYAVGICA+YQSDPRTSHLN V
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

A0A5A7TW09 Putative mitochondrial protein3.6e-8398.76Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTS
        QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPR++
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTS

A0A5D3BY43 Gag-pol polyprotein4.0e-7485.54Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGERGYS+GETDKTLFI++T TDL++AQIYVDDIIFGGFPKTLV NFINIMKSEFEMSLVGELSCFL LQIKQ SEGMFISQEKY KNLVKKFGL QS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        Q+K+TP ATH KITK+ +GT VDHKLYRSMIGSLLYL AS PDI YAVGIC RYQSDPRTSHLN V
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

A0A5D3CER9 Putative mitochondrial protein4.3e-7689.16Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGERGYS GE DKTLFI+RT TDL++ QIYVDDIIFGGF KTLV+NFINIMKSEFEMSLVGELSCFL LQIKQ SEGMFISQEKY KNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        QHKRT VATHAKITK+MVGTEVDHKLYRSMI SLLYLTASRPDIAYAVGICA+YQS+PRTSHLN V
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

A0A5D3CS19 Gag-pol polyprotein1.7e-7788.55Show/hide
Query:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        MYLGER YS+GETDKTLFI+RT T+L++AQIYVDDIIFGGFPKTLV+NFINIMKSEFEMSLVGELSCFL LQIKQ SEGMFISQEKY KNLVKKFGLDQS
Subjt:  MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        QHKRTP  THAKITK+MVGTEVDHKLYRSMIGSLLYLT SRPDIAY VGICARYQSD RTSHLN +
Subjt:  QHKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.2e-1227.85Show/hide
Query:  LGERGYSKGETDKTLFISRTG--TDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS
        L E  +     D+ ++I   G   + +   +YVDD++      T + NF   +  +F M+ + E+  F+ ++I+   + +++SQ  YVK ++ KF ++  
Subjt:  LGERGYSKGETDKTLFISRTG--TDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQS

Query:  QHKRTPVATHAKITKNMVGTEVD-HKLYRSMIGSLLY-LTASRPDIAYAVGICARYQS
            TP+   +KI   ++ ++ D +   RS+IG L+Y +  +RPD+  AV I +RY S
Subjt:  QHKRTPVATHAKITKNMVGTEVD-HKLYRSMIGSLLY-LTASRPDIAYAVGICARYQS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-1729.71Show/hide
Query:  YLGERGYSKGETDKTLFISR-TGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQI--KQISEGMFISQEKYVKNLVKKFGLD
        ++  + Y K  +D  ++  R +  + +I  +YVDD++  G  K L+      +   F+M  +G     L ++I  ++ S  +++SQEKY++ ++++F + 
Subjt:  YLGERGYSKGETDKTLFISR-TGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQI--KQISEGMFISQEKYVKNLVKKFGLD

Query:  QSQHKRTPVATHAKITKNMVGTEVDHK------LYRSMIGSLLY-LTASRPDIAYAVGICARYQSDPRTSHLNTV
         ++   TP+A H K++K M  T V+ K       Y S +GSL+Y +  +RPDIA+AVG+ +R+  +P   H   V
Subjt:  QSQHKRTPVATHAKITKNMVGTEVDHK------LYRSMIGSLLY-LTASRPDIAYAVGICARYQSDPRTSHLNTV

P92519 Uncharacterized mitochondrial protein AtMg008102.2e-1334.88Show/hide
Query:  IYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQHKRTPVATHAKITKNMVGTEV-DHKLYRS
        +YVDDI+  G   TL+   I  + S F M  +G +  FL +QIK    G+F+SQ KY + ++   G+   +   TP+    K+  ++   +  D   +RS
Subjt:  IYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQHKRTPVATHAKITKNMVGTEV-DHKLYRS

Query:  MIGSLLYLTASRPDIAYAVGICARYQSDP
        ++G+L YLT +RPDI+YAV I  +   +P
Subjt:  MIGSLLYLTASRPDIAYAVGICARYQSDP

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.9e-1830.3Show/hide
Query:  YLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQ
        YL   G+    +D +LF+ + G  +V   +YVDDI+  G   TL+ N ++ +   F +    EL  FL ++ K++  G+ +SQ +Y+ +L+ +  +  ++
Subjt:  YLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQ

Query:  HKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
           TP+A   K++        D   YR ++GSL YL  +RPDI+YAV   +++   P   HL  +
Subjt:  HKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.0e-1829.09Show/hide
Query:  YLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQ
        YL   G+    +D +LF+ + G  ++   +YVDDI+  G    L+++ ++ +   F +    +L  FL ++ K++ +G+ +SQ +Y  +L+ +  +  ++
Subjt:  YLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQ

Query:  HKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
           TP+AT  K+T +      D   YR ++GSL YL  +RPD++YAV   ++Y   P   H N +
Subjt:  HKRTPVATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.4e-1731.87Show/hide
Query:  GYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQHKRTP
        G+ +  +D T F+  T T  +   +YVDDII        V+   + +KS F++  +G L  FL L+I + + G+ I Q KY  +L+ + GL   +    P
Subjt:  GYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQHKRTP

Query:  VATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV
        +      + +  G  VD K YR +IG L+YL  +R DI++AV   +++   PR +H   V
Subjt:  VATHAKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTV

ATMG00810.1 DNA/RNA polymerases superfamily protein1.6e-1434.88Show/hide
Query:  IYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQHKRTPVATHAKITKNMVGTEV-DHKLYRS
        +YVDDI+  G   TL+   I  + S F M  +G +  FL +QIK    G+F+SQ KY + ++   G+   +   TP+    K+  ++   +  D   +RS
Subjt:  IYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQHKRTPVATHAKITKNMVGTEV-DHKLYRS

Query:  MIGSLLYLTASRPDIAYAVGICARYQSDP
        ++G+L YLT +RPDI+YAV I  +   +P
Subjt:  MIGSLLYLTASRPDIAYAVGICARYQSDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCTTGGTGAAAGAGGATATTCCAAGGGTGAGACTGACAAAACACTATTCATAAGTAGAACCGGCACTGATCTCGTTATAGCTCAAATTTATGTTGATGACATCAT
CTTTGGTGGATTTCCTAAAACTCTTGTTGAAAACTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAATTGTCCTGCTTTCTGAGGTTACAGATCA
AACAGATAAGTGAGGGAATGTTTATATCACAGGAGAAGTATGTCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCAGTCACAACACAAAAGAACTCCTGTTGCGACTCAT
GCTAAAATTACGAAGAATATGGTAGGTACTGAAGTCGATCACAAATTGTACAGAAGCATGATTGGAAGCCTTTTATATTTGACAGCAAGTAGACCTGATATTGCCTATGC
TGTGGGAATATGTGCTCGGTATCAGTCAGATCCTCGTACCTCTCATTTAAATACAGTTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATCTTGGTGAAAGAGGATATTCCAAGGGTGAGACTGACAAAACACTATTCATAAGTAGAACCGGCACTGATCTCGTTATAGCTCAAATTTATGTTGATGACATCAT
CTTTGGTGGATTTCCTAAAACTCTTGTTGAAAACTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAATTGTCCTGCTTTCTGAGGTTACAGATCA
AACAGATAAGTGAGGGAATGTTTATATCACAGGAGAAGTATGTCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCAGTCACAACACAAAAGAACTCCTGTTGCGACTCAT
GCTAAAATTACGAAGAATATGGTAGGTACTGAAGTCGATCACAAATTGTACAGAAGCATGATTGGAAGCCTTTTATATTTGACAGCAAGTAGACCTGATATTGCCTATGC
TGTGGGAATATGTGCTCGGTATCAGTCAGATCCTCGTACCTCTCATTTAAATACAGTTAATTAA
Protein sequenceShow/hide protein sequence
MYLGERGYSKGETDKTLFISRTGTDLVIAQIYVDDIIFGGFPKTLVENFINIMKSEFEMSLVGELSCFLRLQIKQISEGMFISQEKYVKNLVKKFGLDQSQHKRTPVATH
AKITKNMVGTEVDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNTVN