| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0032794.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.7e-86 | 83.17 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
EFIVMSFGL NA TVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM+SFLGHVVSKAGVSVDP KIEAVTSWPRPSTVSEVRSFLGL
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
Query: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
LTRK APFVWSKACEDSFQNLK+KLVTAPV TVPDGSG+F+IY DASKKGL CVLMQQGKVV YASRQLKSH QNYPTHD+ELA
Subjt: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
Query: AVVFALKI
AVVFALKI
Subjt: AVVFALKI
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| KAA0035816.1 pol protein [Cucumis melo var. makuwa] | 1.1e-85 | 82.69 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
EFIVMSFGL NA VFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLR++SFLGHVVSKAGVSVDP KIEAVT W RPSTVSEVRSFLGL
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
Query: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
LTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG+FVIYSDASKKGL CVLMQQGKVV YASRQLKSH QNYPTHD+ELA
Subjt: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
Query: AVVFALKI
AVVFALKI
Subjt: AVVFALKI
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| KAA0036553.1 pol protein [Cucumis melo var. makuwa] | 1.4e-85 | 82.69 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
EFIVMSFGL NA VFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR++SFLGHVVSKAGVSVDP KIEAVT W RPSTVSE RSFLGL
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
Query: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
LTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG+FVIYSDASKKGL CVLMQQGKVV YASRQLKSH QNYPTHD+ELA
Subjt: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
Query: AVVFALKI
AVVFALKI
Subjt: AVVFALKI
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| KAA0051368.1 pol protein [Cucumis melo var. makuwa] | 3.7e-86 | 83.17 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
EFIVMSFGL NA VFM+LMNRVFR+FLDTFVIVFIDDILIYSKTEAEHEEHLRM+SFLGHVVSKAGVSVDP KIEAVT W RPSTVSEVRSFLGL
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
Query: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
LTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG+FVIYSDASKKGL CVLMQQGKVV YASRQLKSH QNYPTHD+ELA
Subjt: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
Query: AVVFALKI
AVVFALKI
Subjt: AVVFALKI
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| KAA0062719.1 pol protein [Cucumis melo var. makuwa] | 1.7e-83 | 75.76 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM-----------------------ISFLGHVVSKAGVSVDPTKIEA
EFIVMSFGL NAL VFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM +SFLGHVVSKAGVSVDP KIEA
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM-----------------------ISFLGHVVSKAGVSVDPTKIEA
Query: VTSWPRPSTVSEVRSFLGL--------------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKV
VTSW RPSTVSEVRSFLGL LTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG+FVIYSDASKKGL CVL+QQGKV
Subjt: VTSWPRPSTVSEVRSFLGL--------------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKV
Query: VTYASRQLKSHVQNYPTHDVELAAVVFALKI
V YASRQLKSH QNYPTHD+ELAAVVFALKI
Subjt: VTYASRQLKSHVQNYPTHDVELAAVVFALKI
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T0S7 Reverse transcriptase | 5.2e-86 | 82.69 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
EFIVMSFGL NA VFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLR++SFLGHVVSKAGVSVDP KIEAVT W RPSTVSEVRSFLGL
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
Query: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
LTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG+FVIYSDASKKGL CVLMQQGKVV YASRQLKSH QNYPTHD+ELA
Subjt: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
Query: AVVFALKI
AVVFALKI
Subjt: AVVFALKI
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| A0A5A7T0Y9 Reverse transcriptase | 6.8e-86 | 82.69 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
EFIVMSFGL NA VFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR++SFLGHVVSKAGVSVDP KIEAVT W RPSTVSE RSFLGL
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
Query: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
LTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG+FVIYSDASKKGL CVLMQQGKVV YASRQLKSH QNYPTHD+ELA
Subjt: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
Query: AVVFALKI
AVVFALKI
Subjt: AVVFALKI
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| A0A5A7U7V9 Reverse transcriptase | 1.8e-86 | 83.17 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
EFIVMSFGL NA VFM+LMNRVFR+FLDTFVIVFIDDILIYSKTEAEHEEHLRM+SFLGHVVSKAGVSVDP KIEAVT W RPSTVSEVRSFLGL
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
Query: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
LTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG+FVIYSDASKKGL CVLMQQGKVV YASRQLKSH QNYPTHD+ELA
Subjt: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
Query: AVVFALKI
AVVFALKI
Subjt: AVVFALKI
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| A0A5A7VAL8 Pol protein | 8.3e-84 | 75.76 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM-----------------------ISFLGHVVSKAGVSVDPTKIEA
EFIVMSFGL NAL VFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM +SFLGHVVSKAGVSVDP KIEA
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM-----------------------ISFLGHVVSKAGVSVDPTKIEA
Query: VTSWPRPSTVSEVRSFLGL--------------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKV
VTSW RPSTVSEVRSFLGL LTRK APFVWSKACEDSFQNLKQKLVTAPVLTVPDGSG+FVIYSDASKKGL CVL+QQGKV
Subjt: VTSWPRPSTVSEVRSFLGL--------------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKV
Query: VTYASRQLKSHVQNYPTHDVELAAVVFALKI
V YASRQLKSH QNYPTHD+ELAAVVFALKI
Subjt: VTYASRQLKSHVQNYPTHDVELAAVVFALKI
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| A0A5D3E456 Reverse transcriptase | 8.0e-87 | 83.17 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
EFIVMSFGL NA TVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM+SFLGHVVSKAGVSVDP KIEAVTSWPRPSTVSEVRSFLGL
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMISFLGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGL----
Query: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
LTRK APFVWSKACEDSFQNLK+KLVTAPV TVPDGSG+F+IY DASKKGL CVLMQQGKVV YASRQLKSH QNYPTHD+ELA
Subjt: ----------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELA
Query: AVVFALKI
AVVFALKI
Subjt: AVVFALKI
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04323 Retrovirus-related Pol polyprotein from transposon 17.6 | 4.6e-23 | 30.3 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMI-----------------------SFLGHVVSKAGVSVDPTKIEA
E++ M FGL NA F MN + R L+ +V++DDI+++S + EH + L ++ +FLGHV++ G+ +P KIEA
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMI-----------------------SFLGHVVSKAGVSVDPTKIEA
Query: VTSWPRPSTVSEVRSFLGL---------------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGK
+ +P P+ E+++FLGL L + + + +F+ LK + P+L VPD + F + +DAS L VL Q G
Subjt: VTSWPRPSTVSEVRSFLGL---------------------LTRKEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGK
Query: VVTYASRQLKSHVQNYPTHDVELAAVVFALK
++Y SR L H NY T + EL A+V+A K
Subjt: VVTYASRQLKSHVQNYPTHDVELAAVVFALK
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| P10401 Retrovirus-related Pol polyprotein from transposon gypsy | 3.2e-24 | 30.29 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL-----------------------RMISFLGHVVSKAGVSVDPTKIEA
EF + FGL NA ++F ++ V RE + V++DD++I+S+ E++H H+ + +LG +VSK G DP K++A
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL-----------------------RMISFLGHVVSKAGVSVDPTKIEA
Query: VTSWPRPSTVSEVRSFLGLLT-------------------------------RKEAPFVWSKACEDSFQNLKQKLVTAPV-LTVPDGSGNFVIYSDASKK
+ +P P V +VRSFLGL + K+ P +++ ++FQ L+ L + V L PD F + +DAS
Subjt: VTSWPRPSTVSEVRSFLGLLT-------------------------------RKEAPFVWSKACEDSFQNLKQKLVTAPV-LTVPDGSGNFVIYSDASKK
Query: GLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELAAVVFAL
G+ VL Q+G+ +T SR LK QNY T++ EL A+V+AL
Subjt: GLCCVLMQQGKVVTYASRQLKSHVQNYPTHDVELAAVVFAL
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| P20825 Retrovirus-related Pol polyprotein from transposon 297 | 5.4e-24 | 29.87 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMI-----------------------SFLGHVVSKAGVSVDPTKIEA
E++ M FGL NA F MN + R L+ +V++DDI+I+S + EH ++++ +FLGH+V+ G+ +P K++A
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMI-----------------------SFLGHVVSKAGVSVDPTKIEA
Query: VTSWPRPSTVSEVRSFLGLL-------------------TRKEAPFVWSKACE--DSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGK
+ S+P P+ E+R+FLGL K+ + ++ E ++F+ LK ++ P+L +PD FV+ +DAS L VL Q G
Subjt: VTSWPRPSTVSEVRSFLGLL-------------------TRKEAPFVWSKACE--DSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGK
Query: VVTYASRQLKSHVQNYPTHDVELAAVVFALK
+++ SR L H NY + EL A+V+A K
Subjt: VVTYASRQLKSHVQNYPTHDVELAAVVFALK
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| Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein | 2.9e-17 | 29.18 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMI-----------------------SFLGHVVSKAGVSVDPTKIEA
E+ VM FGL+NA + F M FR+ FV V++DDILI+S++ EH +HL + FLG+ + ++ K A
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMI-----------------------SFLGHVVSKAGVSVDPTKIEA
Query: VTSWPRPSTVSEVRSFLGLLT--RKEAP-----------FV-----WSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGK---
+ +P P TV + + FLG++ R+ P F+ W++ + + + LK L +PVL + N+ + +DASK G+ VL +
Subjt: VTSWPRPSTVSEVRSFLGLLT--RKEAP-----------FV-----WSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLCCVLMQQGK---
Query: ---VVTYASRQLKSHVQNYPTHDVELAAVVFAL
VV Y S+ L+S +NYP ++EL ++ AL
Subjt: ---VVTYASRQLKSHVQNYPTHDVELAAVVFAL
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| Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus | 3.4e-18 | 25.82 | Show/hide |
Query: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM-----------------------ISFLGHVVSKAGVSVDPTKIEA
EF+ + FGL NA +F +++ + RE + V+IDDI+++S+ H ++LR+ + FLG++V+ G+ DP K+ A
Subjt: EFIVMSFGLMNALTVFMELMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRM-----------------------ISFLGHVVSKAGVSVDPTKIEA
Query: VTSWPRPSTVSEVRSFLGL--------------------LTR-----------KEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKG
++ P P++V E++ FLG+ LTR + P + SF +LK L ++ +L P + F + +DAS
Subjt: VTSWPRPSTVSEVRSFLGL--------------------LTR-----------KEAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGNFVIYSDASKKG
Query: LCCVLMQ----QGKVVTYASRQLKSHVQNYPTHDVELAAVVFAL
+ VL Q + + + Y SR L +NY T + E+ A++++L
Subjt: LCCVLMQ----QGKVVTYASRQLKSHVQNYPTHDVELAAVVFAL
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