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Cmc08g0225671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0225671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPHD finger protein ALFIN-LIKE 3-like
Genome locationCMiso1.1chr08:16983772..16984175
RNA-Seq ExpressionCmc08g0225671
SyntenyCmc08g0225671
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0035064 - methylated histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011011 - Zinc finger, FYVE/PHD-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067842.1 PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa]5.5e-46100Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
        MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
XP_004141692.1 PHD finger protein ALFIN-LIKE 3 [Cucumis sativus]2.6e-3585.57Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PTVFEVVT IAK+QVKEKSSTANGSKSKSSFKS EAEMQG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
XP_008462330.1 PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo]2.0e-3280Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSS---EAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PTVFEVVT IAK+QVKEKSS+ANGSKSKSSFKS+   EA+ QG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSS---EAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
XP_008462331.1 PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo]8.2e-3482.47Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PTVFEVVT IAK+QVKEKSS+ANGSKSKSSFKS EA+ QG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
XP_016903323.1 PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo]5.5e-46100Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
        MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
TrEMBL top hitse value%identityAlignment
A0A0A0K9L1 PHD-type domain-containing protein1.2e-3585.57Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PTVFEVVT IAK+QVKEKSSTANGSKSKSSFKS EAEMQG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
A0A1S3CGR0 PHD finger protein ALFIN-LIKE 3-like isoform X24.0e-3482.47Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PTVFEVVT IAK+QVKEKSS+ANGSKSKSSFKS EA+ QG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
A0A1S4E514 PHD finger protein ALFIN-LIKE 3-like2.7e-46100Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
        MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
A0A5A7VHJ0 PHD finger protein ALFIN-LIKE 3-like2.7e-46100Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
        MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
A0A5D3BXQ0 PHD finger protein ALFIN-LIKE 3-like isoform X24.0e-3482.47Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PTVFEVVT IAK+QVKEKSS+ANGSKSKSSFKS EA+ QG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
SwissProt top hitse value%identityAlignment
O81488 PHD finger protein ALFIN-LIKE 42.5e-1749.5Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGS--KSKSSFK---SSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKF
        +PT+FEVV   AK+Q K+KSS +N S  +SKSS K    S A+      +  +  +E    EED+DE  +  C ACGE+YA+DEFWICCD+ E WFHGK 
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGS--KSKSSFK---SSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKF

Query:  V
        V
Subjt:  V
Q40359 PHD finger protein Alfin12.3e-1547.52Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKS--KSSFKSSEAEMQGTCARQS-QARKEVETYEEDK--DEHSDILCRACGENYASDEFWICCDIYEKWFHGKF
        +PTVFE+ T  AKQ   + ++  NGS S  KSS KS ++E Q    + S   ++EV++ EE++  D+     C ACG+NY +DEFWICCD+ EKWFHGK 
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKS--KSSFKSSEAEMQGTCARQS-QARKEVETYEEDK--DEHSDILCRACGENYASDEFWICCDIYEKWFHGKF

Query:  V
        V
Subjt:  V
Q5XEM9 PHD finger protein ALFIN-LIKE 56.6e-1848.57Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTA--NGSKSKSSFKSSEAEMQGTCARQSQARKE-------VETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWF
        +PTV+EVVT  A++Q KE  S+A  NG++SKS+ K    E + +    ++  +E        E  +ED+DEH + LC ACG+NYASDEFWICCD+ EKWF
Subjt:  MPTVFEVVTNIAKQQVKEKSSTA--NGSKSKSSFKSSEAEMQGTCARQSQARKE-------VETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWF

Query:  HGKFV
        HG+ V
Subjt:  HGKFV
Q8LA16 PHD finger protein ALFIN-LIKE 71.2e-1651.02Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSS-FKSSEAEMQGTCARQS-QARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PT+FEVVT  AKQ  K++S+  N S+SKSS  K   +E     ++ S   RKE E+ +ED+D+    +C ACG+NY  DEFWICCD  EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSS-FKSSEAEMQGTCARQS-QARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
Q9M2B4 PHD finger protein ALFIN-LIKE 38.6e-1847.92Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PT+FEVVT +AK + K  ++  NG+KSKS+ K   +E + +  +Q +   E E  E+D+D+H + LC ACG++  +DEFWICCD+ EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
Arabidopsis top hitse value%identityAlignment
AT1G14510.1 alfin-like 78.8e-1851.02Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSS-FKSSEAEMQGTCARQS-QARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PT+FEVVT  AKQ  K++S+  N S+SKSS  K   +E     ++ S   RKE E+ +ED+D+    +C ACG+NY  DEFWICCD  EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSS-FKSSEAEMQGTCARQS-QARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
AT2G02470.1 alfin-like 64.8e-1646.6Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSK-SSFKSSEAEMQGTCARQS------QARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHG
        +PT+FEVV+  AKQ  K+ S   N SKSK S  KS ++E     A+ S      +  +E E+ +E +D+    +C ACG+NY +DEFWICCD  EKWFHG
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSK-SSFKSSEAEMQGTCARQS------QARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHG

Query:  KFV
        K V
Subjt:  KFV
AT3G42790.1 alfin-like 36.1e-1947.92Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
        +PT+FEVVT +AK + K  ++  NG+KSKS+ K   +E + +  +Q +   E E  E+D+D+H + LC ACG++  +DEFWICCD+ EKWFHGK V
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV
AT5G20510.1 alfin-like 54.7e-1948.57Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTA--NGSKSKSSFKSSEAEMQGTCARQSQARKE-------VETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWF
        +PTV+EVVT  A++Q KE  S+A  NG++SKS+ K    E + +    ++  +E        E  +ED+DEH + LC ACG+NYASDEFWICCD+ EKWF
Subjt:  MPTVFEVVTNIAKQQVKEKSSTA--NGSKSKSSFKSSEAEMQGTCARQSQARKE-------VETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWF

Query:  HGKFV
        HG+ V
Subjt:  HGKFV
AT5G26210.1 alfin-like 41.8e-1849.5Show/hide
Query:  MPTVFEVVTNIAKQQVKEKSSTANGS--KSKSSFK---SSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKF
        +PT+FEVV   AK+Q K+KSS +N S  +SKSS K    S A+      +  +  +E    EED+DE  +  C ACGE+YA+DEFWICCD+ E WFHGK 
Subjt:  MPTVFEVVTNIAKQQVKEKSSTANGS--KSKSSFK---SSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKF

Query:  V
        V
Subjt:  V

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACTGTATTTGAAGTGGTCACCAATATTGCAAAGCAACAAGTTAAGGAAAAATCATCAACTGCAAATGGTAGCAAATCCAAGTCAAGTTTTAAATCGAGTGAAGC
TGAAATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAAGGAAAGAGGTAGAGACGTATGAAGAAGATAAAGACGAGCACAGTGACATCTTATGTAGGGCATGCGGTGAGA
ACTATGCTTCAGATGAATTTTGGATTTGTTGTGATATCTATGAGAAATGGTTCCATGGGAAATTTGTTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAACTGTATTTGAAGTGGTCACCAATATTGCAAAGCAACAAGTTAAGGAAAAATCATCAACTGCAAATGGTAGCAAATCCAAGTCAAGTTTTAAATCGAGTGAAGC
TGAAATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAAGGAAAGAGGTAGAGACGTATGAAGAAGATAAAGACGAGCACAGTGACATCTTATGTAGGGCATGCGGTGAGA
ACTATGCTTCAGATGAATTTTGGATTTGTTGTGATATCTATGAGAAATGGTTCCATGGGAAATTTGTTGTATGA
Protein sequenceShow/hide protein sequence
MPTVFEVVTNIAKQQVKEKSSTANGSKSKSSFKSSEAEMQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV