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Cmc08g0225721 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0225721
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description40S ribosomal protein S13
Genome locationCMiso1.1chr08:17021035..17021250
RNA-Seq ExpressionCmc08g0225721
SyntenyCmc08g0225721
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005509 - calcium ion binding (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067830.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.6e-2694.03Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

VDD62413.1 unnamed protein product [Brassica oleracea]2.3e-2588.41Show/hide
Query:  VFLLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        V LL  +GLAPEIPEDLYH IKKAV+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  VFLLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

XP_004147941.1 40S ribosomal protein S13 [Cucumis sativus]2.3e-2589.55Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L ++GLAPEIPEDLYH IKKAVSIRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

XP_008466991.1 PREDICTED: 40S ribosomal protein S13-like, partial [Cucumis melo]1.6e-2694.03Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]3.9e-2589.55Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYH IKKAVSIRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

TrEMBL top hitse value%identityAlignment
A0A0A0L5N6 Ribosomal_S13_N domain-containing protein1.1e-2589.55Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L ++GLAPEIPEDLYH IKKAVSIRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

A0A0D3CV16 Ribosomal_S13_N domain-containing protein1.1e-2588.41Show/hide
Query:  VFLLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        V LL  +GLAPEIPEDLYH IKKAV+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  VFLLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

A0A1S3CSM9 40S ribosomal protein S13-like7.7e-2794.03Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

A0A3P6FVN7 Ribosomal_S13_N domain-containing protein1.1e-2588.41Show/hide
Query:  VFLLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        V LL  +GLAPEIPEDLYH IKKAV+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  VFLLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

A0A5A7VKU6 40S ribosomal protein S13-like7.7e-2794.03Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S135.7e-2788.06Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYH IKKAVSIRKHLER RKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

P59223 40S ribosomal protein S13-11.1e-2788.06Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYH IKKAV+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

P59224 40S ribosomal protein S13-21.1e-2788.06Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYH IKKAV+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

P62302 40S ribosomal protein S135.1e-2889.55Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYH IKKAVSIRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

Q69UI2 40S ribosomal protein S13-18.2e-2683.58Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLY  IKKAV+IRKHLERNRKDKDSKF+LILVESRIHRLARYYK+TKK+PP WK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S158.1e-2988.06Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYH IKKAV+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK

AT4G00100.1 ribosomal protein S13A8.1e-2988.06Show/hide
Query:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK
        +L + GLAPEIPEDLYH IKKAV+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Subjt:  LLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTTATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAG
GAAGGACAAAGACTCCAAGTTCAAGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACAAGAAGACCAAGAAGGTCCCACCTGTTTGGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTTATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAG
GAAGGACAAAGACTCCAAGTTCAAGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACAAGAAGACCAAGAAGGTCCCACCTGTTTGGAAATAG
Protein sequenceShow/hide protein sequence
MCVFLLLSKGLAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK