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Cmc08g0225751 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0225751
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:17099013..17099612
RNA-Seq ExpressionCmc08g0225751
SyntenyCmc08g0225751
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.3e-7377.78Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ                     RKEVVFRKP F EVVFRGMRK V +SLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT
        AEKLLRKGCT+FLA++VV+QREKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKELK+QLQ+LVDKGYIRPSV+
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.3e-7377.78Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ                     RKEVVFRKP F EVVFRGMRK V +SLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT
        AEKLLRKGCT+FLA++VV+QREKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKELK+QLQ+LVDKGYIRPSV+
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.3e-7377.78Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ                     RKEVVFRKP F EVVFRGMRK V +SLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT
        AEKLLRKGCT+FLA++VV+QREKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKELK+QLQ+LVDKGYIRPSV+
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT

KAA0067825.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-7583.51Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ                     RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIR
        AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELK+    + +K  +R
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIR

TYK27290.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.3e-7377.78Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ                     RKEVVFRKP F EVVFRGMRK V +SLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT
        AEKLLRKGCT+FLA++VV+QREKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKELK+QLQ+LVDKGYIRPSV+
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase2.1e-7377.78Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ                     RKEVVFRKP F EVVFRGMRK V +SLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT
        AEKLLRKGCT+FLA++VV+QREKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKELK+QLQ+LVDKGYIRPSV+
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT

A0A5A7U2V7 Reverse transcriptase2.1e-7377.78Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ                     RKEVVFRKP F EVVFRGMRK V +SLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT
        AEKLLRKGCT+FLA++VV+QREKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKELK+QLQ+LVDKGYIRPSV+
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT

A0A5A7VQ47 Ty3-gypsy retrotransposon protein1.3e-7583.51Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ                     RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIR
        AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELK+    + +K  +R
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIR

A0A5D3BHI1 Reverse transcriptase2.1e-7377.78Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ                     RKEVVFRKP F EVVFRGMRK V +SLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT
        AEKLLRKGCT+FLA++VV+QREKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKELK+QLQ+LVDKGYIRPSV+
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT

A0A5D3BS67 Reverse transcriptase2.1e-7377.78Show/hide
Query:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK
        MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ                     RKEVVFRKP F EVVFRGMRK V +SLISVLK
Subjt:  MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ---------------------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLK

Query:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT
        AEKLLRKGCT+FLA++VV+QREKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKELK+QLQ+LVDKGYIRPSV+
Subjt:  AEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGAGCCTTTATCTAAGGGGTTAGCTATATACACTCCAGTTAGTGACGTTTTACTTGTCAATGAGGTGTTGCGTAATTGTGAAGTTTTAGTAGAATGTACCAGTAT
GCTAGTGGACTTGATACGACTAGAGTTACAGAGGAAGGAAGTGGTTTTCAGAAAACCAAGCTTTGTTGAAGTGGTTTTTAGAGGTATGAGGAAGGTCGTTCCTAAGAGTT
TAATCTCAGTTTTGAAAGCTGAGAAATTGCTGAGGAAAGGTTGCACATCGTTTCTTGCAAATGTGGTAGTAATGCAAAGAGAAAAGCTGAAGCCAGAAGATGTTTCTATG
GTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTGATAGAGAGATCGAGTTCACTATTGAACTTTTACCAGGGATAGCACCTATTTCACAGGC
ACCATATAAAATGGCTCCAAGCGAGCTTAAAGAATTGAAGGTGCAGTTACAAAAACTGGTTGACAAAGGATACATCAGACCTAGTGTAACGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGAGCCTTTATCTAAGGGGTTAGCTATATACACTCCAGTTAGTGACGTTTTACTTGTCAATGAGGTGTTGCGTAATTGTGAAGTTTTAGTAGAATGTACCAGTAT
GCTAGTGGACTTGATACGACTAGAGTTACAGAGGAAGGAAGTGGTTTTCAGAAAACCAAGCTTTGTTGAAGTGGTTTTTAGAGGTATGAGGAAGGTCGTTCCTAAGAGTT
TAATCTCAGTTTTGAAAGCTGAGAAATTGCTGAGGAAAGGTTGCACATCGTTTCTTGCAAATGTGGTAGTAATGCAAAGAGAAAAGCTGAAGCCAGAAGATGTTTCTATG
GTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTGATAGAGAGATCGAGTTCACTATTGAACTTTTACCAGGGATAGCACCTATTTCACAGGC
ACCATATAAAATGGCTCCAAGCGAGCTTAAAGAATTGAAGGTGCAGTTACAAAAACTGGTTGACAAAGGATACATCAGACCTAGTGTAACGACTTAG
Protein sequenceShow/hide protein sequence
MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQRKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQREKLKPEDVSM
VKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVTT