CuGenDBv2

Gene ID	Cmc08g0225821
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr08:17145235..17145846
RNA-Seq Expression	Cmc08g0225821
Synteny	Cmc08g0225821
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

1.8e-91

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

KAA0043401.1 pol protein [Cucumis melo var. makuwa]

1.8e-91

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

KAA0053631.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.8e-91

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

1.8e-91

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

1.8e-91

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT0 Pol protein

8.8e-92

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

A0A5A7U7V9 Reverse transcriptase

8.8e-92

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

A0A5A7UJG5 Ty3-gypsy retrotransposon protein

8.8e-92

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

A0A5A7VDP3 Pol protein

8.8e-92

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

A0A5A7VJE2 Reverse transcriptase

8.8e-92

94.74

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIWV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME
        VS VSDR+ARFTSKFW+GLQTAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.2e-29

34.64

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++V VDR +K A  VP   + TA + A+++   ++   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH
           ++D +  FTS+ W+         + FS  + PQTDGQT+R NQ +E +LR      P +W  H+ L++  +   +H
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH

P0CT41 Transposon Tf2-12 polyprotein

1.2e-29

34.64

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++V VDR +K A  VP   + TA + A+++   ++   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH
           ++D +  FTS+ W+         + FS  + PQTDGQT+R NQ +E +LR      P +W  H+ L++  +   +H
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.4e-30

37.71

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I V VDR +K AHF+  + T  A++   L    I   HG P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHV
         +  SDR+ R T+  ++ L   +G K   S+A HPQTDGQ++R  Q L  +LRA       +W  H+YL +++ V
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHV

Q99315 Transposon Ty3-G Gag-Pol polyprotein

8.3e-31

38.29

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I V VDR +K AHF+  + T  A++   L    I   HG P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHV
         +  SDR+ R T+  ++ L   +G K   S+A HPQTDGQ++R  Q L  +LRA A     +W  H+YL +++ V
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHV

Q9UR07 Transposon Tf2-11 polyprotein

1.2e-29

34.64

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++V VDR +K A  VP   + TA + A+++   ++   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH
           ++D +  FTS+ W+         + FS  + PQTDGQT+R NQ +E +LR      P +W  H+ L++  +   +H
Subjt:  VSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAGAGAGGTGGCGGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCGTACCGGAATG
GAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGCAGTTGACAGACTTACCAAATCAGCGCACTTCG
TTCCTGGTAAATCCACCTACACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCATTTGTTTCTGATAGAAATGCCCGT
TTCACTTCCAAATTCTGGAGGGGTTTGCAGACTGCTATGGGCACGAAGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTAAGCGTCTGAACCAAAT
TTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGGACTCCCACTTGTATTTGATGGAATTAGATCACGTATGCAGACTGCACAGAGTAGGCAGAA
GAGTTATGCTGATGTTAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGA

mRNA sequence

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Protein sequence

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MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNAR
FTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLHRVGRRVMLMLDGRILSLMWGTRCS

Cmc08g0225821 (gene) of Melon (Charmono) v1.1 genome