; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0225921 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0225921
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:17286249..17286947
RNA-Seq ExpressionCmc08g0225921
SyntenyCmc08g0225921
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031931.1 pol protein [Cucumis melo var. makuwa]5.1e-12293.1Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDKGFIR S+SPWGAPVLFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

KAA0032356.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-12293.1Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVSPWGAP+LFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

KAA0036671.1 gag protease polyprotein [Cucumis melo var. makuwa]6.6e-12293.53Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDLRSGYHQLRIKD DVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLRMVLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

KAA0043070.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-12293.1Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELESGTVPISRAPYRMAPA+LKELKVQLQELLDKGFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDL+SGYHQLRIKDGDVPKT+FRSRYGH+EFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLRMVLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

KAA0047433.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-12293.53Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

TrEMBL top hitse value%identityAlignment
A0A5A7SQP5 Ty3-gypsy retrotransposon protein1.4e-12293.1Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVSPWGAP+LFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

A0A5A7SQU8 Reverse transcriptase2.4e-12293.1Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDKGFIR S+SPWGAPVLFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

A0A5A7TIB4 Reverse transcriptase1.9e-12293.1Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELESGTVPISRAPYRMAPA+LKELKVQLQELLDKGFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDL+SGYHQLRIKDGDVPKT+FRSRYGH+EFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLRMVLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

A0A5A7TV57 Ty3-gypsy retrotransposon protein1.1e-12293.53Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

A0A5A7VIT9 Reverse transcriptase3.2e-12293.53Show/hide
Query:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKN
Subjt:  MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
        RYPLPRI+DLFDQL GATVFS+IDLRSGYHQLRIKD DVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
        EEHLRMVLQTLRDNKLYAKFSKCEFWL+QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.0e-4035.78Show/hide
Query:  RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +++ D+  E     LP P + ++F +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV +K+G++R+  DY+ LNK    N
Subjt:  RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
         YPLP I  L  ++ G+T+F+++DL+S YH +R++ GD  K +FR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
         +H++ VLQ L++  L    +KCEF   QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

P0CT35 Transposon Tf2-2 polyprotein1.0e-4035.78Show/hide
Query:  RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +++ D+  E     LP P + ++F +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV +K+G++R+  DY+ LNK    N
Subjt:  RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
         YPLP I  L  ++ G+T+F+++DL+S YH +R++ GD  K +FR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
         +H++ VLQ L++  L    +KCEF   QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

P0CT41 Transposon Tf2-12 polyprotein1.0e-4035.78Show/hide
Query:  RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN
        +++ D+  E     LP P + ++F +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV +K+G++R+  DY+ LNK    N
Subjt:  RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKN

Query:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH
         YPLP I  L  ++ G+T+F+++DL+S YH +R++ GD  K +FR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH
Subjt:  RYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH

Query:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
         +H++ VLQ L++  L    +KCEF   QV F
Subjt:  EEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.1e-4240.36Show/hide
Query:  PEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRIND
        P +++ +P    +K  IE++ G       PY +     +E+   +Q+LLD  FI  S SP  +PV+ V +KDG+ RLC DYR LNK T+ + +PLPRI++
Subjt:  PEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRIND

Query:  LFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ
        L  ++  A +F+ +DL SGYHQ+ ++  D  KT+F +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL  VL+
Subjt:  LFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ

Query:  TLRDNKLYAKFSKCEFWLRQVPF
         L++  L  K  KC+F   +  F
Subjt:  TLRDNKLYAKFSKCEFWLRQVPF

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.1e-4240.36Show/hide
Query:  PEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRIND
        P +++ +P    +K  IE++ G       PY +     +E+   +Q+LLD  FI  S SP  +PV+ V +KDG+ RLC DYR LNK T+ + +PLPRI++
Subjt:  PEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRIND

Query:  LFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ
        L  ++  A +F+ +DL SGYHQ+ ++  D  KT+F +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL  VL+
Subjt:  LFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ

Query:  TLRDNKLYAKFSKCEFWLRQVPF
         L++  L  K  KC+F   +  F
Subjt:  TLRDNKLYAKFSKCEFWLRQVPF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGGGACTATCCGGATGTCTTTCCTGAAGAACTTTCAGGGTTACCTCCTCACAGAGAGATTAAGTTTGCCATAGAGTTGGAGTCGGGCACGGTTCCTATATCGAG
AGCCCCATATAGAATGGCCCCAGCAGAATTGAAAGAGTTGAAAGTGCAGTTACAGGAGTTGCTTGATAAAGGCTTCATTCGACTGAGTGTGTCACCTTGGGGTGCGCCAG
TTTTATTTGTGAAGAGGAAGGATGGATCGATGCGCCTATGTCATGATTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCAACGATCTG
TTTGACCAGTTACATGGAGCTACAGTGTTCTCTAGGATTGATCTTCGGTCGGGATATCATCAACTGAGGATTAAGGATGGTGATGTACCGAAGACATCCTTTCGTTCCAG
ATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACAAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGA
TTGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACTCTTCGAGATAATAAATTGTATGCAAAGTTC
TCGAAATGTGAGTTTTGGTTGAGGCAGGTTCCTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAGGGACTATCCGGATGTCTTTCCTGAAGAACTTTCAGGGTTACCTCCTCACAGAGAGATTAAGTTTGCCATAGAGTTGGAGTCGGGCACGGTTCCTATATCGAG
AGCCCCATATAGAATGGCCCCAGCAGAATTGAAAGAGTTGAAAGTGCAGTTACAGGAGTTGCTTGATAAAGGCTTCATTCGACTGAGTGTGTCACCTTGGGGTGCGCCAG
TTTTATTTGTGAAGAGGAAGGATGGATCGATGCGCCTATGTCATGATTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCAACGATCTG
TTTGACCAGTTACATGGAGCTACAGTGTTCTCTAGGATTGATCTTCGGTCGGGATATCATCAACTGAGGATTAAGGATGGTGATGTACCGAAGACATCCTTTCGTTCCAG
ATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACAAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGA
TTGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACTCTTCGAGATAATAAATTGTATGCAAAGTTC
TCGAAATGTGAGTTTTGGTTGAGGCAGGTTCCTTTCTAG
Protein sequenceShow/hide protein sequence
MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDL
FDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKF
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