CuGenDBv2

Gene ID	Cmc08g0226021
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr08:17583863..17584459
RNA-Seq Expression	Cmc08g0226021
Synteny	Cmc08g0226021
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR041588 - Integrase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035819.1 pol protein [Cucumis melo var. makuwa]

7.2e-101

100

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPA
        GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPA
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPA

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

3.8e-94

87.88

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYH GK NVVADA SRKVSHS  LIT+QAPLHRD ERAEIAVSVGAVT QLAQLTVQPTLRQ+IID QSNDPYLVEKR LAEA
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE
        GQAVEFS+SS+GGLLFERRLCVP+DSV+KTELL+EAHSSPFSMHPGSTKMY ++KRVYWW NMK+EVA+FVS+CLVCQQVKAPRQKPAGLLQPLS+PE
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

KAA0053259.1 pol protein [Cucumis melo var. makuwa]

1.7e-94

87.88

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYH GK NVVADA SRKVSHS  LIT+QAPLHRDFERAEIAVSVGAVT QLAQLTVQPTLRQKIID QSNDPYLVEKRCLA+ 
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE
        G+AVEFSISS+GGLLFE+RLCVP+DS +KTELL+EA+SSPFSMHPGSTKMY NLKR+YWW NMK+EVA+FVSKCLVCQQVKAPRQKPAGLLQPLSVP+
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

KAA0059062.1 pol protein [Cucumis melo var. makuwa]

3.8e-94

88.38

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYH GK NVVADA SRKVSHS  LIT+QAPLHRD ERAEIAVSVGAVT QLAQLTVQPTLRQ+IID QSNDPYLVEKR LAEA
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE
        GQAVEFS+SS+GGLLFERRLCVP+DS IKTELL+EAHSSPFSMHPGSTKMY +LKRVYWW NMK+EVA+FVS+CLVCQQVKAPRQKPAGLLQPLS+PE
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

KAA0060839.1 pol protein [Cucumis melo var. makuwa]

1.7e-94

88.89

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYH GK NVVADA SRKVSHS  LIT+QAPLHRD ERAEIAVSVGAVT QLAQLTVQPTLRQ+IID Q NDPYLVEKR LAEA
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE
        GQAVEFSISS+GGLLFERRLCVP+DS +KTELL+EAHSSPFSMHPGSTKMY +LKRVYWW NMK+EVAKFVSKCLVCQQVKAPRQKPAGLLQPLS+PE
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T351 Pol protein

3.5e-101

100

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPA
        GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPA
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPA

A0A5A7U330 Reverse transcriptase

1.8e-94

87.88

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYH GK NVVADA SRKVSHS  LIT+QAPLHRD ERAEIAVSVGAVT QLAQLTVQPTLRQ+IID QSNDPYLVEKR LAEA
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE
        GQAVEFS+SS+GGLLFERRLCVP+DSV+KTELL+EAHSSPFSMHPGSTKMY ++KRVYWW NMK+EVA+FVS+CLVCQQVKAPRQKPAGLLQPLS+PE
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

A0A5A7UIF4 Reverse transcriptase

8.3e-95

87.88

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYH GK NVVADA SRKVSHS  LIT+QAPLHRDFERAEIAVSVGAVT QLAQLTVQPTLRQKIID QSNDPYLVEKRCLA+ 
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE
        G+AVEFSISS+GGLLFE+RLCVP+DS +KTELL+EA+SSPFSMHPGSTKMY NLKR+YWW NMK+EVA+FVSKCLVCQQVKAPRQKPAGLLQPLSVP+
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

A0A5A7UP94 Pol protein

1.8e-94

87.88

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYH GK NVVADA SRKVSHS  LIT+QAPLHRD ERAEIAVSVGAVT QLAQLTVQPTLRQ+IID QSNDPYLVEKR LAEA
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE
        GQAVEFS+SS+GGLLFERRLCVP+DS +KTELL EAHSSPFSMHPGSTKMY +LKR+YWW NMK+EVA+FVSKCLVCQQVKAPRQKPAGLLQPLS+PE
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

A0A5A7V556 Pol protein

8.3e-95

88.89

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Query:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA
        MRQRRWLELVKDYDCEILYH GK NVVADA SRKVSHS  LIT+QAPLHRD ERAEIAVSVGAVT QLAQLTVQPTLRQ+IID Q NDPYLVEKR LAEA
Subjt:  MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEA

Query:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE
        GQAVEFSISS+GGLLFERRLCVP+DS +KTELL+EAHSSPFSMHPGSTKMY +LKRVYWW NMK+EVAKFVSKCLVCQQVKAPRQKPAGLLQPLS+PE
Subjt:  GQAVEFSISSNGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGACAGCGAAGATGGCTTGAATTAGTGAAGGATTACGATTGTGAGATATTGTATCATCAAGGCAAGGGGAATGTGGTAGCTGATGCTTTTAGTAGAAAGGTATCACA
TTCAGTAGTACTTATTACCCAACAAGCCCCATTGCATCGAGATTTTGAGAGGGCTGAGATTGCAGTGTCAGTAGGGGCAGTCACTTCACAGTTAGCCCAGTTGACGGTGC
AGCCGACTTTGAGGCAGAAGATCATTGATACTCAGAGTAACGATCCTTACTTGGTTGAGAAGCGTTGCCTAGCAGAAGCAGGGCAAGCTGTTGAGTTCTCCATATCCTCT
AATGGTGGGCTTTTGTTTGAGAGGCGTCTTTGTGTGCCAGCAGACAGCGTAATTAAAACAGAATTATTGACTGAGGCTCATAGTTCCCCATTTTCCATGCACCCAGGTAG
TACGAAGATGTATCTGAACCTGAAACGAGTTTACTGGTGGCTTAATATGAAGAAAGAGGTGGCAAAATTTGTTAGTAAATGTTTGGTGTGCCAGCAGGTTAAGGCACCAA
GGCAGAAACCAGCAGGTTTATTACAACCCTTGAGCGTACCAGAATGA

mRNA sequence

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Protein sequence

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MRQRRWLELVKDYDCEILYHQGKGNVVADAFSRKVSHSVVLITQQAPLHRDFERAEIAVSVGAVTSQLAQLTVQPTLRQKIIDTQSNDPYLVEKRCLAEAGQAVEFSISS
NGGLLFERRLCVPADSVIKTELLTEAHSSPFSMHPGSTKMYLNLKRVYWWLNMKKEVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPE

Cmc08g0226021 (gene) of Melon (Charmono) v1.1 genome