CuGenDBv2

Gene ID	Cmc08g0226061
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr08:17627884..17628699
RNA-Seq Expression	Cmc08g0226061
Synteny	Cmc08g0226061
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

7.7e-138

96.8

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFEVGDKVFLKVA M+GV+RF+RRGKLSPRFVGPFEILERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

KAA0035938.1 pol protein [Cucumis melo var. makuwa]

1.0e-137

96.4

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWD+HLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFE+GDKVFLKVA M+GV+RF+RRGKLSPRFVGPFEILERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

KAA0059071.1 pol protein [Cucumis melo var. makuwa]

5.7e-141

99.6

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFEVGDKVFLKVALMRGVVRF+RRGKLSPRFVGPFEILERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

KAA0063715.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.5e-138

97.2

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFEVGDKVFLKVA MRGV+RFKRRGKLSPRFVGPFEI+ERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

1.5e-138

97.6

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFEVGDKVFLKVA MRGVVRF+RRGKLSPRFVGPFEILERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZD6 Pol protein

4.9e-138

96.4

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWD+HLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFE+GDKVFLKVA M+GV+RF+RRGKLSPRFVGPFEILERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

A0A5A7V003 Reverse transcriptase

2.8e-141

99.6

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFEVGDKVFLKVALMRGVVRF+RRGKLSPRFVGPFEILERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

A0A5A7VCR4 Ty3-gypsy retrotransposon protein

7.5e-139

97.2

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFEVGDKVFLKVA MRGV+RFKRRGKLSPRFVGPFEI+ERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

A0A5A7VJE2 Reverse transcriptase

7.5e-139

97.6

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFEVGDKVFLKVA MRGVVRF+RRGKLSPRFVGPFEILERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

Q84KB0 Pol protein

3.7e-138

96.8

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV
        VRRKDLEFEVGDKVFLKVA M+GV+RF+RRGKLSPRFVGPFEILERIGPV
Subjt:  VRRKDLEFEVGDKVFLKVALMRGVVRFKRRGKLSPRFVGPFEILERIGPV

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

5.7e-35

34.52

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP
        D++ +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP
Subjt:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP

P0CT35 Transposon Tf2-2 polyprotein

5.7e-35

34.52

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP
        D++ +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP
Subjt:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP

P0CT36 Transposon Tf2-3 polyprotein

5.7e-35

34.52

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP
        D++ +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP
Subjt:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP

P0CT41 Transposon Tf2-12 polyprotein

5.7e-35

34.52

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP
        D++ +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP
Subjt:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP

Q9UR07 Transposon Tf2-11 polyprotein

5.7e-35

34.52

Show/hide

Query:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP
        D++ +++ EF+ GD V +K    R    F  +  KL+P F GPF +L++ GP
Subjt:  DVRRKDL-EFEVGDKVFLKVALMRGVVRF-KRRGKLSPRFVGPFEILERIGP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCATGGATTTCATTACAGGACTGCCGAGAACTCTGAAGGGTTTTACAGTGATTTGGGTTGTAGTGGACAGGCTTACCAAGTCAGCACACTTTGTTCCGGGTAAATC
CACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCCGAGATAGTGAGGTTGCATGGGGTGCCAGTGTCGATTGTTTCTGATAGAGATGTCCGTTTCACTTCCAAAT
TCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAATCAGGTTTTAGAGGATATG
TTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATCGGCATGGCACCATTTGA
GGCCTTGTACGGCAAATGTTGTAGATCCCCGGTCTGCTGGGGCGAAGTGGGAGAGCAAAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAAA
TTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACTT
ATGAGAGGCGTCGTGCGTTTTAAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTCGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGTTATCGCTTGGCGTTGCCA
CCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDM
LRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAL
MRGVVRFKRRGKLSPRFVGPFEILERIGPVVIAWRCHHHSRQFMMCFMFLC

Cmc08g0226061 (gene) of Melon (Charmono) v1.1 genome