; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0226091 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0226091
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:17719862..17720611
RNA-Seq ExpressionCmc08g0226091
SyntenyCmc08g0226091
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036671.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-12189.56Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDY+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGY QLRIKD D PKTAFRSRYGHYEFIVMSFGL NAP VF+DLMN VF+EFLDTF+
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEE+LRMVL+TLR NKLYAKFSKCEF LK VSFLGHVVSKAGVSVDPAKIEAVT W +PSTVSEVRSFL LA YYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        IATPLTQLTRKG PF+WSKACED FQNLKQKLVTAPVLTVPDGS SFVI
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

KAA0048687.1 pol protein [Cucumis melo var. makuwa]1.6e-12189.56Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDY+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGY QLRIKD D PKTAFRSRYGHYEFIVMSFGL NAP VF+DLMN VF+EFLDTF+
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEE+LRMVL+TLR NKLYAKFSKCEF LK VSFLGHVVSKAGVSVDPAKIEAVT W +PSTVSEVRSFL LA YYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        IATPLTQLTRKG PF+WSKACED FQNLKQKLVTAPVLTVPDGS SFVI
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

KAA0048696.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-12189.56Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKI+LRSGY QLRIKDSD PKTAFRSRYG+YEFIVMSFGL N   VF+DLMN VF+EFLDTF+
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHE++LRMVL+TLRANKLYAKFSKCEF LK VSF+GHVVSKAGVSVDP KIEAVTSWP+PSTVSEVRSFL LA YYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        IATPLTQLTRKG PF+WSKACED FQNLKQKLVTAPVLTVPDGS SFVI
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

KAA0052785.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-130100Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLT
        IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLT
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLT

KAA0057668.1 pol protein [Cucumis melo var. makuwa]1.6e-12189.16Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDY+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGY QLRIKD D PKTAFRSRYGHYEFIVMSFGL NAP VF+DLMN VF+EFLDTF+
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEE+LRMVL+TLR NKLYAKFSKCEF LKHVSFLGHVVSKAGVSVDPAKIEA T W +PSTVSEVRSFL LA YYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        IATPLTQLTRKG PF+WSKACED FQNLKQKLVTAP+LTVPDGS SFVI
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

TrEMBL top hitse value%identityAlignment
A0A5A7T538 Reverse transcriptase7.6e-12289.56Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDY+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGY QLRIKD D PKTAFRSRYGHYEFIVMSFGL NAP VF+DLMN VF+EFLDTF+
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEE+LRMVL+TLR NKLYAKFSKCEF LK VSFLGHVVSKAGVSVDPAKIEAVT W +PSTVSEVRSFL LA YYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        IATPLTQLTRKG PF+WSKACED FQNLKQKLVTAPVLTVPDGS SFVI
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

A0A5A7T6R9 Reverse transcriptase7.6e-12289.56Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDY+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGY QLRIKD D PKTAFRSRYGHYEFIVMSFGL NAP VF+DLMN VF+EFLDTF+
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEE+LRMVL+TLR NKLYAKFSKCEF LK VSFLGHVVSKAGVSVDPAKI+AVT W +PSTVSEVRSFL LA YYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        IATPLTQLTRKGVPF+WSKACED FQNLKQKLVTAPVLTVPDGS SFVI
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

A0A5A7U330 Reverse transcriptase7.6e-12289.56Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDY+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGY QLRIKD D PKTAFRSRYGHYEFIVMSFGL NAP VF+DLMN VF+EFLDTF+
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEE+LRMVL+TLR NKLYAKFSKCEF LK VSFLGHVVSKAGVSVDPAKIEAVT W +PSTVSEVRSFL LA YYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        IATPLTQLTRKG PF+WSKACED FQNLKQKLVTAPVLTVPDGS SFVI
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

A0A5A7UGC1 Reverse transcriptase5.3e-131100Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLT
        IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLT
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLT

A0A5A7URA1 Reverse transcriptase7.6e-12289.16Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        MRLCIDY+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKI+LRSGY QLRIKD D PKTAFRSRYGHYEFIVMSFGL NAP VF+DLMN VF+EFLDTF+
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        IVFIDDILIYSKTEAEHEE+LRMVL+TLR NKLYAKFSKCEF LKHVSFLGHVVSKAGVSVDPAKIEA T W +PSTVSEVRSFL LA YYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        IATPLTQLTRKG PF+WSKACED FQNLKQKLVTAP+LTVPDGS SFVI
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.1e-4836.14Show/hide
Query:  RLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFLI
        R+ IDY++LN++TV +++P+P +D++  +L     F+ I+L  G+ Q+ +      KTAF +++GHYE++ M FGL NAP  F   MN + +  L+   +
Subjt:  RLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFLI

Query:  VFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRI
        V++DDI+++S +  EH ++L +V E L    L  +  KCEFL +  +FLGHV++  G+  +P KIEA+  +P P+   E+++FL L  YYR+F+ NF+ I
Subjt:  VFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRI

Query:  ATPLTQLTRKGVPF-IWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        A P+T+  +K +     +   +  F+ LK  +   P+L VPD ++ F +
Subjt:  ATPLTQLTRKGVPF-IWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

P0CT34 Transposon Tf2-1 polyprotein1.2e-4436.14Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        +R+ +DYK LNK    N YPLP I+ L  ++QG+T+F+K++L+S Y  +R++  D  K AFR   G +E++VM +G+  AP  F   +N +  E  ++ +
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        + ++DDILI+SK+E+EH ++++ VL+ L+   L    +KCEF    V F+G+ +S+ G +     I+ V  W QP    E+R FL   +Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        +  PL  L +K V + W+       +N+KQ LV+ PVL   D S+  ++
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

P0CT41 Transposon Tf2-12 polyprotein1.2e-4436.14Show/hide
Query:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL
        +R+ +DYK LNK    N YPLP I+ L  ++QG+T+F+K++L+S Y  +R++  D  K AFR   G +E++VM +G+  AP  F   +N +  E  ++ +
Subjt:  MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFL

Query:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR
        + ++DDILI+SK+E+EH ++++ VL+ L+   L    +KCEF    V F+G+ +S+ G +     I+ V  W QP    E+R FL   +Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSR

Query:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        +  PL  L +K V + W+       +N+KQ LV+ PVL   D S+  ++
Subjt:  IATPLTQLTRKGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

P20825 Retrovirus-related Pol polyprotein from transposon 2971.9e-4836.14Show/hide
Query:  RLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFLI
        R+ IDY++LN++T+ ++YP+P +D++  +L     F+ I+L  G+ Q+ + +    KTAF ++ GHYE++ M FGL NAP  F   MN + +  L+   +
Subjt:  RLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFLI

Query:  VFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRI
        V++DDI+I+S +  EH  ++++V   L    L  +  KCEFL K  +FLGH+V+  G+  +P K++A+ S+P P+   E+R+FL L  YYR+F+ N++ I
Subjt:  VFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRI

Query:  ATPLTQLTRKGVPFIWSK-ACEDGFQNLKQKLVTAPVLTVPDGSRSFVI
        A P+T   +K       K    + F+ LK  ++  P+L +PD  + FV+
Subjt:  ATPLTQLTRKGVPFIWSK-ACEDGFQNLKQKLVTAPVLTVPDGSRSFVI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.9e-4635.8Show/hide
Query:  RLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFLI
        R+ +D+K LN VT+ + YP+P I+     L  A  F+ ++L SG+ Q+ +K+SD PKTAF +  G YEF+ + FGL NAP +F  +++ + +E +     
Subjt:  RLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFLI

Query:  VFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRI
        V+IDDI+++S+    H +NLR+VL +L    L     K  FL   V FLG++V+  G+  DP K+ A++  P P++V E++ FL + SYYR+F+++++++
Subjt:  VFIDDILIYSKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRI

Query:  ATPLTQLTR-----------KGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSF
        A PLT LTR             VP    +     F +LK  L ++ +L  P  ++ F
Subjt:  ATPLTQLTR-----------KGVPFIWSKACEDGFQNLKQKLVTAPVLTVPDGSRSF

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.3e-2441.98Show/hide
Query:  NLRMVLETLRANKLYAKFSKCEFLLKHVSFLG--HVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRIATPLTQLTRKGVPFIW
        +L MVL+    ++ YA   KC F    +++LG  H++S  GVS DPAK+EA+  WP+P   +E+R FL L  YYRRFV+N+ +I  PLT+L +K     W
Subjt:  NLRMVLETLRANKLYAKFSKCEFLLKHVSFLG--HVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRIATPLTQLTRKGVPFIW

Query:  SKACEDGFQNLKQKLVTAPVLTVPDGSRSFV
        ++     F+ LK  + T PVL +PD    FV
Subjt:  SKACEDGFQNLKQKLVTAPVLTVPDGSRSFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCTATGTATTGACTACAAGGAGTTGAATAAGGTAACCGTTAAAAACAAATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTT
CTCTAAGATCAACCTTCGGTCGGGATATCTTCAGCTGAGGATTAAGGATAGCGATGCACCAAAGACAGCCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGATGT
CTTTTGGTTTGATGAATGCTCCAGTAGTGTTTGTGGATTTGATGAACATAGTGTTTAAAGAGTTCCTAGACACTTTTTTGATCGTTTTTATTGATGATATTTTGATATAT
TCCAAGACAGAGGCCGAGCATGAGGAGAATTTACGTATGGTTCTAGAAACTCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAGTTTTTGTTGAAGCATGT
ATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCAACCTTCCACAGTCAGTGAGGTTCGTAGTT
TTCTGTGTTTAGCAAGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGTTCCTTTCATTTGGAGCAAGGCC
TGTGAGGACGGTTTTCAGAACCTTAAACAAAAGCTAGTTACTGCACCAGTTCTTACCGTACCTGATGGTTCCAGGAGTTTTGTGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCCTATGTATTGACTACAAGGAGTTGAATAAGGTAACCGTTAAAAACAAATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTT
CTCTAAGATCAACCTTCGGTCGGGATATCTTCAGCTGAGGATTAAGGATAGCGATGCACCAAAGACAGCCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGATGT
CTTTTGGTTTGATGAATGCTCCAGTAGTGTTTGTGGATTTGATGAACATAGTGTTTAAAGAGTTCCTAGACACTTTTTTGATCGTTTTTATTGATGATATTTTGATATAT
TCCAAGACAGAGGCCGAGCATGAGGAGAATTTACGTATGGTTCTAGAAACTCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAGTTTTTGTTGAAGCATGT
ATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCAACCTTCCACAGTCAGTGAGGTTCGTAGTT
TTCTGTGTTTAGCAAGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGTTCCTTTCATTTGGAGCAAGGCC
TGTGAGGACGGTTTTCAGAACCTTAAACAAAAGCTAGTTACTGCACCAGTTCTTACCGTACCTGATGGTTCCAGGAGTTTTGTGATTTAA
Protein sequenceShow/hide protein sequence
MRLCIDYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKINLRSGYLQLRIKDSDAPKTAFRSRYGHYEFIVMSFGLMNAPVVFVDLMNIVFKEFLDTFLIVFIDDILIY
SKTEAEHEENLRMVLETLRANKLYAKFSKCEFLLKHVSFLGHVVSKAGVSVDPAKIEAVTSWPQPSTVSEVRSFLCLASYYRRFVENFSRIATPLTQLTRKGVPFIWSKA
CEDGFQNLKQKLVTAPVLTVPDGSRSFVI