; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0226481 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0226481
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:18484966..18485750
RNA-Seq ExpressionCmc08g0226481
SyntenyCmc08g0226481
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032541.1 pol protein [Cucumis melo var. makuwa]7.1e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAP ELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDLRSGYHQLRIRD DIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLYAKFSKCEFWL+KV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V VDPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

KAA0040542.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.1e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAP ELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDLRSGYHQLRIRD DIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLYAKFSKCEFWL+KV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V VDPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

KAA0056047.1 reverse transcriptase [Cucumis melo var. makuwa]7.1e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAPVELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDL+SGYHQLRIRDSDIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLY KFSKCEFWLKKV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V +DPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

KAA0060745.1 pol protein [Cucumis melo var. makuwa]7.1e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAP ELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDLRSGYHQLRIRD DIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLYAKFSKCEFWL+KV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V VDPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

KAA0063793.1 pol protein [Cucumis melo var. makuwa]7.1e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAP ELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDLRSGYHQLRIRD DIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLYAKFSKCEFWL+KV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V VDPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

TrEMBL top hitse value%identityAlignment
A0A5A7SSL3 Reverse transcriptase3.5e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAP ELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDLRSGYHQLRIRD DIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLYAKFSKCEFWL+KV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V VDPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

A0A5A7TAT0 DNA/RNA polymerases superfamily protein3.5e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAP ELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDLRSGYHQLRIRD DIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLYAKFSKCEFWL+KV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V VDPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

A0A5A7UN68 Reverse transcriptase3.5e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAPVELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDL+SGYHQLRIRDSDIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLY KFSKCEFWLKKV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V +DPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

A0A5A7V4E4 Reverse transcriptase3.5e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAP ELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDLRSGYHQLRIRD DIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLYAKFSKCEFWL+KV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V VDPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

A0A5A7V6R2 Reverse transcriptase3.5e-9471.65Show/hide
Query:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK
        MAP ELKELKVQLQELL+KGFIRPSVSPWGAPVLFV KKDG MRLC DYRELNKVTVKNRY LP IDDLFDQLQGA +F+KIDLRSGYHQLRIRD DIPK
Subjt:  MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPK

Query:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG
         AFRSRY                                           +YSKTEAEHEEHLH+VLE  RANKLYAKFSKCEFWL+KV+FLGHVVSSEG
Subjt:  AAFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEG

Query:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP
        V VDPAKIEAVT+WPRPSTVS++ SFLGLA +YRRF+EDFS IASPLTQLTRKGT F   P
Subjt:  VLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEP

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.9e-2929.76Show/hide
Query:  KELKVQLQELLNKGFIRPSVSPWGAPVLFVKK------DGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKA
        +E++ Q+Q++LN+G IR S SP+ +P+  V K          R+  DYR+LN++TV +R+ +P +D++  +L     FT IDL  G+HQ+ +    + K 
Subjt:  KELKVQLQELLNKGFIRPSVSPWGAPVLFVKK------DGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKA

Query:  AFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGV
        AF +++                                           V+S +  EH + L  V E      L  +  KCEF  ++ +FLGHV++ +G+
Subjt:  AFRSRY-------------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGV

Query:  LVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRK
          +P KIEA+  +P P+   ++ +FLGL  +YR+F+ +F+ IA P+T+  +K
Subjt:  LVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRK

P20825 Retrovirus-related Pol polyprotein from transposon 2972.9e-2929.25Show/hide
Query:  ELKVQLQELLNKGFIRPSVSPWGAPVLFVKKD------GLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKAA
        E++ Q+QE+LN+G IR S SP+ +P   V K          R+  DYR+LN++T+ +RY +P +D++  +L     FT IDL  G+HQ+ + +  I K A
Subjt:  ELKVQLQELLNKGFIRPSVSPWGAPVLFVKKD------GLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKAA

Query:  FRSR-------------------------------------------YVYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVL
        F ++                                            ++S +  EH   +  V        L  +  KCEF  K+ +FLGH+V+ +G+ 
Subjt:  FRSR-------------------------------------------YVYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVL

Query:  VDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGT
         +P K++A+ S+P P+   ++ +FLGL  +YR+F+ +++ IA P+T   +K T
Subjt:  VDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein9.9e-3034.31Show/hide
Query:  KELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKAAF---
        +E+   +Q+LL+  FI PS SP  +PV+ V KKDG  RLC DYR LNK T+ + + LP ID+L  ++  A IFT +DL SGYHQ+ +   D  K AF   
Subjt:  KELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKAAF---

Query:  -------------------RSRY-------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVLVDPAKI
                            +RY                   ++S++  EH +HL  VLE  +   L  K  KC+F  ++  FLG+ +  + +     K 
Subjt:  -------------------RSRY-------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVLVDPAKI

Query:  EAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPL
         A+  +P P TV +   FLG+ ++YRRF+ + S IA P+
Subjt:  EAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.6e-3031.25Show/hide
Query:  PVELK-ELKVQLQELLNKGFIRPSVSPWGAPVLFVKK------DGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDS
        PV ++ E++ Q+ ELL  G IRPS SP+ +P+  V K      +   R+  D++ LN VT+ + Y +P I+     L  A  FT +DL SG+HQ+ +++S
Subjt:  PVELK-ELKVQLQELLNKGFIRPSVSPWGAPVLFVKK------DGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDS

Query:  DIPKAAF---RSRY----------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVV
        DIPK AF     +Y                                        V+S+    H ++L  VL       L     K  F   +V FLG++V
Subjt:  DIPKAAF---RSRY----------------------------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVV

Query:  SSEGVLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTR
        +++G+  DP K+ A++  P P++V ++  FLG+  +YR+F++D++ +A PLT LTR
Subjt:  SSEGVLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTR

Q99315 Transposon Ty3-G Gag-Pol polyprotein9.9e-3034.31Show/hide
Query:  KELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKAAF---
        +E+   +Q+LL+  FI PS SP  +PV+ V KKDG  RLC DYR LNK T+ + + LP ID+L  ++  A IFT +DL SGYHQ+ +   D  K AF   
Subjt:  KELKVQLQELLNKGFIRPSVSPWGAPVLFV-KKDGLMRLCTDYRELNKVTVKNRYQLP-IDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKAAF---

Query:  -------------------RSRY-------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVLVDPAKI
                            +RY                   ++S++  EH +HL  VLE  +   L  K  KC+F  ++  FLG+ +  + +     K 
Subjt:  -------------------RSRY-------------------VYSKTEAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVLVDPAKI

Query:  EAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPL
         A+  +P P TV +   FLG+ ++YRRF+ + S IA P+
Subjt:  EAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.1e-1841.67Show/hide
Query:  HLHKVLEIFRANKLYAKFSKCEFWLKKVSFLG--HVVSSEGVLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGT
        HL  VL+I+  ++ YA   KC F   ++++LG  H++S EGV  DPAK+EA+  WP P   +++  FLGL  +YRRF++++  I  PLT+L +K +
Subjt:  HLHKVLEIFRANKLYAKFSKCEFWLKKVSFLG--HVVSSEGVLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAGTAGAGCTGAAGGAGCTGAAGGTCCAGTTGCAGGAGTTACTAAACAAGGGTTTCATACGACCTAGTGTGTCACCTTGGGGAGCACCAGTACTGTTTGTGAA
GAAGGATGGATTGATGCGTCTTTGCACTGATTACAGAGAGCTGAATAAGGTGACAGTCAAGAACCGCTATCAATTGCCCATTGACGACTTGTTTGATCAGCTGCAAGGAG
CCATTATTTTCACTAAGATCGATTTACGTTCAGGCTATCACCAGTTGAGGATTAGAGACAGTGACATCCCTAAGGCTGCTTTTCGTTCTAGATATGTTTACTCCAAGACG
GAGGCTGAGCATGAGGAGCATTTGCATAAGGTTTTGGAGATTTTTCGAGCCAATAAGCTATATGCTAAGTTTTCTAAGTGTGAGTTTTGGCTGAAGAAGGTGTCTTTTCT
TGGTCATGTGGTGTCGAGTGAGGGAGTTTTGGTAGACCCAGCGAAGATTGAAGCTGTTACTAGTTGGCCTCGACCATCTACAGTCAGCAAAGTTTGTAGTTTCCTGGGTT
TGGCAGATTTTTACAGAAGGTTCATGGAAGATTTCTCTTGTATAGCCAGTCCTTTGACTCAGTTGACCAGGAAAGGGACTTTTTTTTGTTTGGAGCCCAACATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAGTAGAGCTGAAGGAGCTGAAGGTCCAGTTGCAGGAGTTACTAAACAAGGGTTTCATACGACCTAGTGTGTCACCTTGGGGAGCACCAGTACTGTTTGTGAA
GAAGGATGGATTGATGCGTCTTTGCACTGATTACAGAGAGCTGAATAAGGTGACAGTCAAGAACCGCTATCAATTGCCCATTGACGACTTGTTTGATCAGCTGCAAGGAG
CCATTATTTTCACTAAGATCGATTTACGTTCAGGCTATCACCAGTTGAGGATTAGAGACAGTGACATCCCTAAGGCTGCTTTTCGTTCTAGATATGTTTACTCCAAGACG
GAGGCTGAGCATGAGGAGCATTTGCATAAGGTTTTGGAGATTTTTCGAGCCAATAAGCTATATGCTAAGTTTTCTAAGTGTGAGTTTTGGCTGAAGAAGGTGTCTTTTCT
TGGTCATGTGGTGTCGAGTGAGGGAGTTTTGGTAGACCCAGCGAAGATTGAAGCTGTTACTAGTTGGCCTCGACCATCTACAGTCAGCAAAGTTTGTAGTTTCCTGGGTT
TGGCAGATTTTTACAGAAGGTTCATGGAAGATTTCTCTTGTATAGCCAGTCCTTTGACTCAGTTGACCAGGAAAGGGACTTTTTTTTGTTTGGAGCCCAACATTTGA
Protein sequenceShow/hide protein sequence
MAPVELKELKVQLQELLNKGFIRPSVSPWGAPVLFVKKDGLMRLCTDYRELNKVTVKNRYQLPIDDLFDQLQGAIIFTKIDLRSGYHQLRIRDSDIPKAAFRSRYVYSKT
EAEHEEHLHKVLEIFRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVLVDPAKIEAVTSWPRPSTVSKVCSFLGLADFYRRFMEDFSCIASPLTQLTRKGTFFCLEPNI