; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0226501 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0226501
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr08:18527029..18527937
RNA-Seq ExpressionCmc08g0226501
SyntenyCmc08g0226501
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032016.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]6.6e-11484.81Show/hide
Query:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK
        +KEQCPKTPQ+V+D SNIPY SAVGSLMYA+LC+RS+ICYSVGIVSRYQSNP RDHWT VKNILKY RRTK YMLV GSKDLILTGYTDF FQ+DKDARK
Subjt:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK

Query:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH
        STSGSVFTLNGGAVVW S+KQSCI DSTM+AEY+  CEAA E +WLKKFLTDLE+VPNMHLPITLYCDNSG V NSREPRSHKH KHIERKYHL+REI+H
Subjt:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH

Query:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL
        RGDVTVTKISSE+N+ADPFTK LT KVFE HLHGLGL
Subjt:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL

KAA0032016.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.4e-1578.33Show/hide
Query:  RLSKESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTK
        ++ +E KGGL YDPQENK+FVSTNA FLEED I+NHQTRSKLVLEEISK+ TD+PSSSTK
Subjt:  RLSKESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTK

KAA0032016.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]7.3e-11384.58Show/hide
Query:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK
        +KEQCPKTPQ+VKD SNIPY SAVGSLMYA+LC+R +ICY VGIVSRYQSNPG DHWT +KNILKYLRRTK YML YGSKDLILT YTD DFQSDKD RK
Subjt:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK

Query:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH
        STS SVFTLNG AVVW  +KQSCIADSTM+AEYV +CEAA EAVWLKKFLTDLEIVPN+HLPITLYCDNSG VANS+EPRSHK  KHIERKY LIREI+H
Subjt:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH

Query:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL
        RGDVT+TKISSE+NI DPFTKALTAKVFESHLH LGLCCL
Subjt:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL

KAA0054281.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-11557.77Show/hide
Query:  KESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTK-------------------------------------EQCPKT
        KESKGGL YD QENK+FVSTNATFLEED I+NHQTRSKLVLEEISK+TTD+PSSSTK                                     E     
Subjt:  KESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTK-------------------------------------EQCPKT

Query:  PQD-----------------------------------------------------------------------------------VKDTSNIPYVSAVG
        P D                                                                                   ++D SNIPY    G
Subjt:  PQD-----------------------------------------------------------------------------------VKDTSNIPYVSAVG

Query:  SLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIA
        SLMYA+LC+R + CYSVG+VSRYQSNPGRDHWT VKNILKYLRR K YMLVYGSKDLILTGYTD DFQ+DKDARKSTSGSVFTLN GAVVW S+KQS I 
Subjt:  SLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIA

Query:  DSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTA
        DSTM+AEYV  C+AA EAVWLKKFLT LE+V NMH+PIT+YCDNSG +ANSREPRSHK GKHIER+YHLIREI+HRGDVTVTKISSE+N+ DPFTKALTA
Subjt:  DSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTA

Query:  KVFESHLHGLGL
        KVFESHLHGLGL
Subjt:  KVFESHLHGLGL

KAA0058854.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-11284.81Show/hide
Query:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK
        +KEQCPKTPQ+V+D SNIPY  A+GSLMYA+LC R +ICYSV IVS YQSNPGRDHWTVVKNI+KYLRRTK YM VYGSKDLILT YTD DFQ+DKDARK
Subjt:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK

Query:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH
        STSGSVF LNGGAVVW S+KQSCIADSTM+ +YV  CEAA EAVWLKKFLTDLE+VPNM LPITLYCDNSG VANSREPRSHKHGKHIERKYHLIR+IVH
Subjt:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH

Query:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL
        RGDVTVTKISSE+N+ADPF KALTAK+FESHLHGLGL
Subjt:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL

TYK05842.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-15794.58Show/hide
Query:  KESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIV
        KESKGGL YDPQENKIFVSTNATFLEED IQNHQTRSKLVLEEISKS TDKPSSSTKEQCPKTPQ+VKDTSNIPYV AVGSLMYA+LCSRSNICYSVGIV
Subjt:  KESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIV

Query:  SRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVW
        SRYQSNP RDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTD DFQSDKDARKSTSGSVFTLNGGAVVWTS+K+SCIADSTMK EYVPTCEA NEAVW
Subjt:  SRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVW

Query:  LKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL
        LKKFLT+LEIVPNMHLPITLYCDNSG VANSREPRSHKHGKHIERKYHLIREI+HRGDVTVTKISSE+NIADPFTKALTAKVFESHLHGLGLCCL
Subjt:  LKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL

TrEMBL top hitse value%identityAlignment
A0A5A7UL66 Gag/pol protein1.7e-11557.77Show/hide
Query:  KESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTK-------------------------------------EQCPKT
        KESKGGL YD QENK+FVSTNATFLEED I+NHQTRSKLVLEEISK+TTD+PSSSTK                                     E     
Subjt:  KESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTK-------------------------------------EQCPKT

Query:  PQD-----------------------------------------------------------------------------------VKDTSNIPYVSAVG
        P D                                                                                   ++D SNIPY    G
Subjt:  PQD-----------------------------------------------------------------------------------VKDTSNIPYVSAVG

Query:  SLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIA
        SLMYA+LC+R + CYSVG+VSRYQSNPGRDHWT VKNILKYLRR K YMLVYGSKDLILTGYTD DFQ+DKDARKSTSGSVFTLN GAVVW S+KQS I 
Subjt:  SLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIA

Query:  DSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTA
        DSTM+AEYV  C+AA EAVWLKKFLT LE+V NMH+PIT+YCDNSG +ANSREPRSHK GKHIER+YHLIREI+HRGDVTVTKISSE+N+ DPFTKALTA
Subjt:  DSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTA

Query:  KVFESHLHGLGL
        KVFESHLHGLGL
Subjt:  KVFESHLHGLGL

A0A5D3C3P6 Gag/pol protein3.1e-15794.58Show/hide
Query:  KESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIV
        KESKGGL YDPQENKIFVSTNATFLEED IQNHQTRSKLVLEEISKS TDKPSSSTKEQCPKTPQ+VKDTSNIPYV AVGSLMYA+LCSRSNICYSVGIV
Subjt:  KESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIV

Query:  SRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVW
        SRYQSNP RDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTD DFQSDKDARKSTSGSVFTLNGGAVVWTS+K+SCIADSTMK EYVPTCEA NEAVW
Subjt:  SRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVW

Query:  LKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL
        LKKFLT+LEIVPNMHLPITLYCDNSG VANSREPRSHKHGKHIERKYHLIREI+HRGDVTVTKISSE+NIADPFTKALTAKVFESHLHGLGLCCL
Subjt:  LKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL

A0A5D3CYG9 Retrovirus-related pol polyprotein from transposon tnt 1-943.2e-11484.81Show/hide
Query:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK
        +KEQCPKTPQ+V+D SNIPY SAVGSLMYA+LC+RS+ICYSVGIVSRYQSNP RDHWT VKNILKY RRTK YMLV GSKDLILTGYTDF FQ+DKDARK
Subjt:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK

Query:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH
        STSGSVFTLNGGAVVW S+KQSCI DSTM+AEY+  CEAA E +WLKKFLTDLE+VPNMHLPITLYCDNSG V NSREPRSHKH KHIERKYHL+REI+H
Subjt:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH

Query:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL
        RGDVTVTKISSE+N+ADPFTK LT KVFE HLHGLGL
Subjt:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL

A0A5D3CYG9 Retrovirus-related pol polyprotein from transposon tnt 1-946.8e-1678.33Show/hide
Query:  RLSKESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTK
        ++ +E KGGL YDPQENK+FVSTNA FLEED I+NHQTRSKLVLEEISK+ TD+PSSSTK
Subjt:  RLSKESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTK

A0A5D3CYG9 Retrovirus-related pol polyprotein from transposon tnt 1-943.5e-11384.58Show/hide
Query:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK
        +KEQCPKTPQ+VKD SNIPY SAVGSLMYA+LC+R +ICY VGIVSRYQSNPG DHWT +KNILKYLRRTK YML YGSKDLILT YTD DFQSDKD RK
Subjt:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK

Query:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH
        STS SVFTLNG AVVW  +KQSCIADSTM+AEYV +CEAA EAVWLKKFLTDLEIVPN+HLPITLYCDNSG VANS+EPRSHK  KHIERKY LIREI+H
Subjt:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH

Query:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL
        RGDVT+TKISSE+NI DPFTKALTAKVFESHLH LGLCCL
Subjt:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL

A0A5D3DJL5 Gag/pol protein1.3e-11284.81Show/hide
Query:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK
        +KEQCPKTPQ+V+D SNIPY  A+GSLMYA+LC R +ICYSV IVS YQSNPGRDHWTVVKNI+KYLRRTK YM VYGSKDLILT YTD DFQ+DKDARK
Subjt:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK

Query:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH
        STSGSVF LNGGAVVW S+KQSCIADSTM+ +YV  CEAA EAVWLKKFLTDLE+VPNM LPITLYCDNSG VANSREPRSHKHGKHIERKYHLIR+IVH
Subjt:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH

Query:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL
        RGDVTVTKISSE+N+ADPF KALTAK+FESHLHGLGL
Subjt:  RGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.9e-3333.22Show/hide
Query:  GLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQS
        G+  + QE+KI++S +A           +  SK  +E  +  +T  PS    E       +  +  N P  S +G LMY +LC+R ++  +V I+SRY S
Subjt:  GLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQS

Query:  NPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLI----LTGYTDFDFQSDKDARKSTSGSVFTL-NGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVW
            + W  +K +L+YL+ T    L++  K+L     + GY D D+   +  RKST+G +F + +   + W + +Q+ +A S+ +AEY+   EA  EA+W
Subjt:  NPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLI----LTGYTDFDFQSDKDARKSTSGSVFTL-NGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVW

Query:  LKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL
        LK  LT + I   +  PI +Y DN G ++ +  P  HK  KHI+ KYH  RE V    + +  I +E  +AD FTK L A  F      LGL
Subjt:  LKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL

P0CV72 Secreted RxLR effector protein 1611.3e-2442.75Show/hide
Query:  NIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLI-LTGYTDFDFQSDKDARKSTSGSVFTLNGGAVV
        N+PY+SAVG++MY ++ +R ++  +VG++S++ S+P   HW  +K +L+YL+ T+ Y L +       L GY+D D+  D ++R+STSG +F LNGG V 
Subjt:  NIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLI-LTGYTDFDFQSDKDARKSTSGSVFTLNGGAVV

Query:  WTSVKQSCIADSTMKAEYVPTCEAANEAVWL
        W S KQ  +A S+ + EY+   EA  EAVWL
Subjt:  WTSVKQSCIADSTMKAEYVPTCEAANEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-4943.67Show/hide
Query:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK
        +K+ CP T ++  + + +PY SAVGSLMYA++C+R +I ++VG+VSR+  NPG++HW  VK IL+YLR T    L +G  D IL GYTD D   D D RK
Subjt:  TKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARK

Query:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH
        S++G +FT +GGA+ W S  Q C+A ST +AEY+   E   E +WLK+FL +L +    ++   +YCD+   +  S+    H   KHI+ +YH IRE+V 
Subjt:  STSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVH

Query:  RGDVTVTKISSEKNIADPFTKALTAKVFE
           + V KIS+ +N AD  TK +    FE
Subjt:  RGDVTVTKISSEKNIADPFTKALTAKVFE

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.7e-2530.57Show/hide
Query:  HQTRSKLVLEEISKST--TDKPSSSTKEQCPKTP--QDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRT-KH
        H ++ + +L+ ++++   T KP ++     PK       K T    Y   VGSL Y +  +R +I Y+V  +S++   P  +H   +K IL+YL  T  H
Subjt:  HQTRSKLVLEEISKST--TDKPSSSTKEQCPKTP--QDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRT-KH

Query:  YMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGE
         + +     L L  Y+D D+  DKD   ST+G +  L    + W+S KQ  +  S+ +AEY      ++E  W+   LT+L I   +  P  +YCDN G 
Subjt:  YMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGE

Query:  VANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL
              P  H   KHI   YH IR  V  G + V  +S+   +AD  TK L+   F++    +G+
Subjt:  VANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.0e-2530.19Show/hide
Query:  HQTRSKLVLEEISKST--TDKPSSSTKEQCPKTP--QDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRT-KH
        H ++ +  L+ ++++   T KP ++     PK       K      Y   VGSL Y +  +R ++ Y+V  +S+Y   P  DHW  +K +L+YL  T  H
Subjt:  HQTRSKLVLEEISKST--TDKPSSSTKEQCPKTP--QDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRT-KH

Query:  YMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGE
         + +     L L  Y+D D+  D D   ST+G +  L    + W+S KQ  +  S+ +AEY      ++E  W+   LT+L I   +  P  +YCDN G 
Subjt:  YMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGE

Query:  VANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL
              P  H   KHI   YH IR  V  G + V  +S+   +AD  TK L+   F++    +G+
Subjt:  VANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.7e-1932.4Show/hide
Query:  YVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSK-DLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTS
        Y   +G LMY +  +R +I ++V  +S++   P   H   V  IL Y++ T    L Y S+ ++ L  ++D  FQS KD R+ST+G    L    + W S
Subjt:  YVSAVGSLMYAILCSRSNICYSVGIVSRYQSNPGRDHWTVVKNILKYLRRTKHYMLVYGSK-DLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTS

Query:  VKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIRE
         KQ  ++ S+ +AEY     A +E +WL +F  +L++   +  P  L+CDN+  +  +     H+  KHIE   H +RE
Subjt:  VKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPNMHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATTTGTAGGTTATCCAAAGAATCTAAAGGTGGTTTGTCATATGACCCTCAAGAAAATAAAATATTTGTGTCGACAAATGCTACGTTCTTAGAGGAAGACCAAAT
ACAAAATCATCAAACTCGCAGTAAACTAGTATTAGAAGAAATTTCCAAAAGTACTACAGATAAACCTAGTTCGTCCACTAAAGAACAATGTCCAAAAACACCTCAAGATG
TTAAGGATACGAGTAACATTCCCTATGTTTCTGCTGTTGGGAGCCTGATGTATGCAATATTATGTAGTAGATCTAACATTTGCTATTCAGTAGGGATAGTTAGTAGATAT
CAGTCCAATCCTGGACGTGATCATTGGACAGTCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAACATTACATGCTTGTGTATGGTTCTAAGGATCTAATCCTTAC
TGGATACACTGACTTTGATTTTCAATCTGATAAAGATGCTAGAAAGTCTACATCGGGATCAGTTTTCACTCTAAATGGAGGAGCAGTAGTATGGACAAGCGTAAAACAAT
CTTGTATTGCTGACTCCACTATGAAAGCCGAATATGTACCAACCTGTGAAGCAGCAAATGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAATTGTTCCAAAT
ATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGAAGTTGCAAATTCACGAGAACCTAGAAGTCATAAACACGGAAAGCACATTGAACGAAAGTACCATCTTAT
CAGGGAAATCGTACATCGAGGAGATGTTACAGTAACAAAAATCTCCTCCGAAAAAAATATAGCTGATCCGTTTACAAAAGCTCTCACGGCTAAAGTGTTTGAGAGCCACC
TACATGGTTTAGGTCTATGTTGTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATTTGTAGGTTATCCAAAGAATCTAAAGGTGGTTTGTCATATGACCCTCAAGAAAATAAAATATTTGTGTCGACAAATGCTACGTTCTTAGAGGAAGACCAAAT
ACAAAATCATCAAACTCGCAGTAAACTAGTATTAGAAGAAATTTCCAAAAGTACTACAGATAAACCTAGTTCGTCCACTAAAGAACAATGTCCAAAAACACCTCAAGATG
TTAAGGATACGAGTAACATTCCCTATGTTTCTGCTGTTGGGAGCCTGATGTATGCAATATTATGTAGTAGATCTAACATTTGCTATTCAGTAGGGATAGTTAGTAGATAT
CAGTCCAATCCTGGACGTGATCATTGGACAGTCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAACATTACATGCTTGTGTATGGTTCTAAGGATCTAATCCTTAC
TGGATACACTGACTTTGATTTTCAATCTGATAAAGATGCTAGAAAGTCTACATCGGGATCAGTTTTCACTCTAAATGGAGGAGCAGTAGTATGGACAAGCGTAAAACAAT
CTTGTATTGCTGACTCCACTATGAAAGCCGAATATGTACCAACCTGTGAAGCAGCAAATGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAATTGTTCCAAAT
ATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGAAGTTGCAAATTCACGAGAACCTAGAAGTCATAAACACGGAAAGCACATTGAACGAAAGTACCATCTTAT
CAGGGAAATCGTACATCGAGGAGATGTTACAGTAACAAAAATCTCCTCCGAAAAAAATATAGCTGATCCGTTTACAAAAGCTCTCACGGCTAAAGTGTTTGAGAGCCACC
TACATGGTTTAGGTCTATGTTGTTTGTAA
Protein sequenceShow/hide protein sequence
MPICRLSKESKGGLSYDPQENKIFVSTNATFLEEDQIQNHQTRSKLVLEEISKSTTDKPSSSTKEQCPKTPQDVKDTSNIPYVSAVGSLMYAILCSRSNICYSVGIVSRY
QSNPGRDHWTVVKNILKYLRRTKHYMLVYGSKDLILTGYTDFDFQSDKDARKSTSGSVFTLNGGAVVWTSVKQSCIADSTMKAEYVPTCEAANEAVWLKKFLTDLEIVPN
MHLPITLYCDNSGEVANSREPRSHKHGKHIERKYHLIREIVHRGDVTVTKISSEKNIADPFTKALTAKVFESHLHGLGLCCL