| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 2.8e-83 | 84.86 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M KRS TGKGLRA+ PLELVHSDL GPMNVKAR GYEYFISFIDD+SRYGHVYL+ +KS SFEKFKEYKAEVENE GKTIKTL+SDRGG+YMD +FQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
IE GIQSQLSAPS PQQNGV +RRNRTLLDMVRSMMS+AQL DSFWGYALETAI+ILNNVPSKSV ETPYELWKGRK S R+FRI
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
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| KAA0033558.1 gag/pol protein [Cucumis melo var. makuwa] | 1.8e-82 | 84.32 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M K+S TGKGLRA TPLELVHSDL GPMNVKA+RGY+Y ISFIDDYSRYGH+YLIQNKS+SFEKFKEYKAEVENESGKTIK L+SDRGG+YMDL+FQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
IEHGIQSQL P+ PQQNGV +RRNRTLLDMVRS+MSFAQL +SFW YALET IYILNNVPSKSVSE PYELWKGRKGS HFRI
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
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| KAA0037569.1 gag/pol protein [Cucumis melo var. makuwa] | 7.7e-81 | 83.78 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M KRS TGK LRA+TPLELVHSDL GPMNVKAR GY++FI+FIDDYSRY HVYLIQNKS FEKFKEYKAEVENESGKTIKT +SDRGG+YMDL+FQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
I+HGIQSQLSAPS PQQNGV +RRN+TLLDMVRSMMSFAQL DSF GYALET IYILNNVP KSVSET YELWK RK S RHFRI
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
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| KAA0043372.1 gag/pol protein [Cucumis melo var. makuwa] | 5.9e-81 | 85.96 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M KRS TGKGLRA+T LELVHSDL GPMNVKARRGYEYFISFI DYSRYG+VYL+QNKS+SFEKFK+YKAEVENESGKT KTL+SDR +YMDLQFQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKG
IEHGIQSQLS PS PQQN VP++RN+TLLDMVRSMMSFAQL DSFWGYALET IYILNNVPSKSVS TPYELWKGRKG
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKG
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| TYK14486.1 gag/pol protein [Cucumis melo var. makuwa] | 2.9e-80 | 85.39 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M KRS TGK LRA+T L+L+HSDL GPMNVKAR GYEYFISFIDDYSRYGH+YLIQNKS+SFEKFKEYKA+VENESGKTIKTL+SD+GGKYMDLQFQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKG
IEHGIQSQLSAPSMPQQNGV +RRN+TLLDMV S+MSF+QL SFWGY LETAIYILNNVPSKSVSETPYELWK KG
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T8E8 Gag/pol protein | 3.7e-81 | 83.78 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M KRS TGK LRA+TPLELVHSDL GPMNVKAR GY++FI+FIDDYSRY HVYLIQNKS FEKFKEYKAEVENESGKTIKT +SDRGG+YMDL+FQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
I+HGIQSQLSAPS PQQNGV +RRN+TLLDMVRSMMSFAQL DSF GYALET IYILNNVP KSVSET YELWK RK S RHFRI
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
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| A0A5A7TJA8 Gag/pol protein | 2.9e-81 | 85.96 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M KRS TGKGLRA+T LELVHSDL GPMNVKARRGYEYFISFI DYSRYG+VYL+QNKS+SFEKFK+YKAEVENESGKT KTL+SDR +YMDLQFQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKG
IEHGIQSQLS PS PQQN VP++RN+TLLDMVRSMMSFAQL DSFWGYALET IYILNNVPSKSVS TPYELWKGRKG
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKG
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| A0A5A7UC33 Gag/pol protein | 1.4e-80 | 85.39 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M KRS TGK LRA+T L+L+HSDL GPMNVKAR GYEYFISFIDDYSRYGH+YLIQNKS+SFEKFKEYKA+VENESGKTIKTL+SD+GGKYMDLQFQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKG
IEHGIQSQLSAPSMPQQNGV +RRN+TLLDMV S+MSF+QL SFWGY LETAIYILNNVPSKSVSETPYELWK KG
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKG
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| A0A5D3B9E3 Gag/pol protein | 8.9e-83 | 84.32 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M K+S TGKGLRA TPLELVHSDL GPMNVKA+RGY+Y ISFIDDYSRYGH+YLIQNKS+SFEKFKEYKAEVENESGKTIK L+SDRGG+YMDL+FQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
IEHGIQSQL P+ PQQNGV +RRNRTLLDMVRS+MSFAQL +SFW YALET IYILNNVPSKSVSE PYELWKGRKGS HFRI
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
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| E2GK51 Gag/pol protein (Fragment) | 1.4e-83 | 84.86 | Show/hide |
Query: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
M KRS TGKGLRA+ PLELVHSDL GPMNVKAR GYEYFISFIDD+SRYGHVYL+ +KS SFEKFKEYKAEVENE GKTIKTL+SDRGG+YMD +FQDY
Subjt: MIKRSLTGKGLRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYF
Query: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
IE GIQSQLSAPS PQQNGV +RRNRTLLDMVRSMMS+AQL DSFWGYALETAI+ILNNVPSKSV ETPYELWKGRK S R+FRI
Subjt: IEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVSETPYELWKGRKGSFRHFRI
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 5.4e-29 | 36.42 | Show/hide |
Query: PLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYFIEHGIQSQLSAPSMP
PL +VHSD+ GP+ YF+ F+D ++ Y YLI+ KS+ F F+++ A+ E + L D G +Y+ + + + ++ GI L+ P P
Subjt: PLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYFIEHGIQSQLSAPSMP
Query: QQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSV---SETPYELWKGRKGSFRHFRI
Q NGV +R RT+ + R+M+S A+L SFWG A+ TA Y++N +PS+++ S+TPYE+W +K +H R+
Subjt: QQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSV---SETPYELWKGRKGSFRHFRI
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.4e-37 | 41.76 | Show/hide |
Query: LELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYFIEHGIQSQLSAPSMPQ
L+LV+SD+ GPM +++ G +YF++FIDD SR VY+++ K F+ F+++ A VE E+G+ +K L+SD GG+Y +F++Y HGI+ + + P PQ
Subjt: LELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYFIEHGIQSQLSAPSMPQ
Query: QNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVS-ETPYELWKGRKGSFRHFRI
NGV +R NRT+++ VRSM+ A+L SFWG A++TA Y++N PS ++ E P +W ++ S+ H ++
Subjt: QNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVS-ETPYELWKGRKGSFRHFRI
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| Q07791 Transposon Ty2-DR3 Gag-Pol polyprotein | 1.9e-13 | 27.44 | Show/hide |
Query: RSLTGKGLRAQ---TPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNK--SNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQD
R + G L+ Q P + +H+D++GP++ + YFISF D+ +R+ VY + ++ + F A ++N+ + +Q DRG +Y +
Subjt: RSLTGKGLRAQ---TPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNK--SNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQD
Query: YFIEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPS
+F GI + + + + +GV +R NRTLL+ R+++ + L + W A+E + I N++ S
Subjt: YFIEHGIQSQLSAPSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPS
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.4e-21 | 28.98 | Show/hide |
Query: LRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYFIEHGIQSQLS
+ + PLE ++SD++ + + Y Y++ F+D ++RY +Y ++ KS E F +K +EN I T SD GG+++ L +YF +HGI S
Subjt: LRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYFIEHGIQSQLS
Query: APSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVS-ETPYELWKGRKGSFRHFRI
P P+ NG+ +R++R +++ +++S A + ++W YA A+Y++N +P+ + E+P++ G ++ R+
Subjt: APSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVS-ETPYELWKGRKGSFRHFRI
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.9e-21 | 28.98 | Show/hide |
Query: LRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYFIEHGIQSQLS
+ + PLE ++SD++ + + Y Y++ F+D ++RY +Y ++ KS + F +K+ VEN I TL SD GG+++ L +DY +HGI S
Subjt: LRAQTPLELVHSDLYGPMNVKARRGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLQSDRGGKYMDLQFQDYFIEHGIQSQLS
Query: APSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVS-ETPYELWKGRKGSFRHFRI
P P+ NG+ +R++R +++M +++S A + ++W YA A+Y++N +P+ + ++P++ G+ ++ ++
Subjt: APSMPQQNGVPKRRNRTLLDMVRSMMSFAQLSDSFWGYALETAIYILNNVPSKSVS-ETPYELWKGRKGSFRHFRI
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