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Cmc08g0226671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0226671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description40S ribosomal protein S25
Genome locationCMiso1.1chr08:19056760..19058834
RNA-Seq ExpressionCmc08g0226671
SyntenyCmc08g0226671
Gene Ontology termsGO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004977 - Ribosomal protein S25
IPR036388 - Winged helix-like DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060056.1 40S ribosomal protein S25-2 [Cucumis melo var. makuwa]1.4e-27100Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

XP_004144662.1 40S ribosomal protein S25-2 [Cucumis sativus]1.2e-2695.65Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKL+SEAPKFKLITP+I+SDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

XP_004291591.1 PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca]5.3e-2797.1Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIR+ISAH+SQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

XP_008442240.1 PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]1.4e-27100Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

XP_022142384.1 40S ribosomal protein S25-2 [Momordica charantia]6.9e-2797.1Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        +VLFDQGTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

TrEMBL top hitse value%identityAlignment
A0A0A0KYW1 40S ribosomal protein S255.7e-2795.65Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKL+SEAPKFKLITP+I+SDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

A0A1S3B608 40S ribosomal protein S256.8e-28100Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

A0A5A7V0P8 40S ribosomal protein S256.8e-28100Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

A0A5D3CKR9 40S ribosomal protein S259.8e-2794.2Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLLSE PK+KL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

A0A6J1CLE7 40S ribosomal protein S253.4e-2797.1Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        +VLFDQGTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

SwissProt top hitse value%identityAlignment
P46301 40S ribosomal protein S257.2e-2785.51Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFD+ TYDKLLSEAPK+KLITPS+LSDRLRI+GSLAR+AI+DLMARGSIR++SAH+SQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Q8GYL5 40S ribosomal protein S25-37.2e-2788.24Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN
        MVLFDQ TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQQIYTRAT+
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN

Q9SIK2 40S ribosomal protein S25-21.1e-2788.41Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Q9SIW5 40S ribosomal protein S25-11.2e-2483.58Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRAT
        MVLFDQ TYDKL+SEAPKFKLITPSILSDRLRINGSLAR+AI+DLM +G+IR++S HSSQQI TRAT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRAT

Q9T029 40S ribosomal protein S25-41.2e-2685.51Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Arabidopsis top hitse value%identityAlignment
AT2G21580.1 Ribosomal protein S25 family protein7.9e-2988.41Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

AT2G21580.2 Ribosomal protein S25 family protein7.9e-2988.41Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

AT4G34555.1 Ribosomal protein S25 family protein5.1e-2888.24Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN
        MVLFDQ TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQQIYTRAT+
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN

AT4G39200.1 Ribosomal protein S25 family protein8.7e-2885.51Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

AT4G39200.2 Ribosomal protein S25 family protein8.7e-2885.51Show/hide
Query:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        MVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Subjt:  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTCTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCTTCCATCCTTTCTGACAGATTAAGGATCAATGGATCATT
GGCACGTCGGGCGATCAAGGATTTAATGGCGAGAGGTTCTATCCGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACTAGAGCCACAAATACATGA
mRNA sequenceShow/hide mRNA sequence
AAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTCTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCC
TTCCATCCTTTCTGACAGATTAAGGATCAATGGATCATTGGCACGTCGGGCGATCAAGGATTTAATGGCGAGAGGTTCTATCCGGCTCATATCTGCTCATTCTAGCCAGC
AAATATACACTAGAGCCACAAATACATGATCAAAGAATTGCCATTTAAAGGAGGAACATCTTGGTTTTCTTGCATCTCGTCAGAAACTATCTATGATTTTGAATATCCGC
ATGTTTGCATTTAGAACTGGATGAATTATTTGCACTGCTTGATCGGATATATTTTTATATAATTTGCATTTTTGCTTTCATTTCTTTGAGTTCCTCTAGCAAATGAGCAA
GCATGTACTATTGATTTTGGATTAGAGATTCGTGGTCTCTACTTTGTCGATGGAAGAAAAAATACTGAAACATCTTATGTAAAGGGTCGTAAGGCACTATTTTAATGGCT
CATTGAATTCACTTTGACTTTTCATTTCTTTCAATTTATCTAATTTTTTTTCTTACATCAAGTCACAATATATTGGAAAAATTATTTTTT
Protein sequenceShow/hide protein sequence
MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT