| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] | 1.7e-98 | 80.67 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
MILVSKDY GI ELKKQ SN+FE+KDLGELKRILGMDVKRDREKGLLTIS+ESY IKLLEK+N+S K VSTPLAS FR S SQCPVT+QER+EMSNIPY
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
C YAMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLDKRRSLSGHIFRLYGNVVSWK
Subjt: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
Query: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
V LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Subjt: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
|
|
| KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 4.1e-97 | 79.83 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
MILVSKDY I ELKKQ SN+FE+KDLGELKRILGMDVKRD+EKGLLTIS+ESY IKLLEK+N+S K VSTPLAS FR S SQCPVT+QER+EMSNIPY
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
C YAMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLDKRRSLSGHIFRLYGNVVSWK
Subjt: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
Query: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
V LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Subjt: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
|
|
| KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 2.6e-83 | 80.49 | Show/hide |
Query: KQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPK
++ SN+FE+KDLGELKRILGMDVKRDR+KGL TIS+ESY IKLLEK+NISG K VSTPLAS FR S SQCPVT+QER ++ Y MSMISRFMSNP
Subjt: KQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPK
Query: KEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNV
KEHW VKWVLRY KGS SVSLCYS+D DKSTLLEGFTD DYVADLDKRRSLSGHIFRLYGNVVSWKV LQPVVALST ESEYISLGEAVKE V L+R V
Subjt: KEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNV
Query: GELLS
GELLS
Subjt: GELLS
|
|
| TYK13826.1 putative polyprotein [Cucumis melo var. makuwa] | 6.3e-98 | 80.25 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
MILVSKDY I ELKKQ SN+FE+KDLGELKRILGMDVKRD+EKGLLTIS+ESY IKLLEK+N+SG K VSTPLAS FR S SQCPVT+QER+EMSNIPY
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
C YAMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLDKRRSLSGHIFRLYGNVVSWK
Subjt: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
Query: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
V LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Subjt: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
|
|
| TYK21344.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 1.7e-71 | 68.64 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
MILV KDY I ELK+Q SN+FE+KDL +LKRILGMDVKRDR+KGLLTIS+ESY IKLLEK ++
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: CYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYIS
YAM MISRFMSNP K+HW AVKWVLRY KGSASVSLCYS+D DKSTLL GFTD DYVA LDKRRSLSGHI+RLYGNVVSWKV LQPVVALST ESEYIS
Subjt: CYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYIS
Query: LGEAVKEVVWLKRNVGELLS
LGEA+KE VWLKR VGELLS
Subjt: LGEAVKEVVWLKRNVGELLS
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class | 8.0e-99 | 80.67 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
MILVSKDY GI ELKKQ SN+FE+KDLGELKRILGMDVKRDREKGLLTIS+ESY IKLLEK+N+S K VSTPLAS FR S SQCPVT+QER+EMSNIPY
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
C YAMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLDKRRSLSGHIFRLYGNVVSWK
Subjt: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
Query: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
V LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Subjt: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
|
|
| A0A5A7UB25 Putative gag-pol polyprotein | 2.0e-97 | 79.83 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
MILVSKDY I ELKKQ SN+FE+KDLGELKRILGMDVKRD+EKGLLTIS+ESY IKLLEK+N+S K VSTPLAS FR S SQCPVT+QER+EMSNIPY
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
C YAMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLDKRRSLSGHIFRLYGNVVSWK
Subjt: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
Query: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
V LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Subjt: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
|
|
| A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass | 1.2e-83 | 80.49 | Show/hide |
Query: KQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPK
++ SN+FE+KDLGELKRILGMDVKRDR+KGL TIS+ESY IKLLEK+NISG K VSTPLAS FR S SQCPVT+QER ++ Y MSMISRFMSNP
Subjt: KQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPK
Query: KEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNV
KEHW VKWVLRY KGS SVSLCYS+D DKSTLLEGFTD DYVADLDKRRSLSGHIFRLYGNVVSWKV LQPVVALST ESEYISLGEAVKE V L+R V
Subjt: KEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNV
Query: GELLS
GELLS
Subjt: GELLS
|
|
| A0A5D3CTV2 Putative polyprotein | 3.1e-98 | 80.25 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
MILVSKDY I ELKKQ SN+FE+KDLGELKRILGMDVKRD+EKGLLTIS+ESY IKLLEK+N+SG K VSTPLAS FR S SQCPVT+QER+EMSNIPY
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
C YAMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLDKRRSLSGHIFRLYGNVVSWK
Subjt: C------------------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
Query: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
V LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Subjt: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
|
|
| A0A5D3DCM9 Retrotransposon protein, putative, Ty1-copia subclass | 8.4e-72 | 68.64 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
MILV KDY I ELK+Q SN+FE+KDL +LKRILGMDVKRDR+KGLLTIS+ESY IKLLEK ++
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: CYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYIS
YAM MISRFMSNP K+HW AVKWVLRY KGSASVSLCYS+D DKSTLL GFTD DYVA LDKRRSLSGHI+RLYGNVVSWKV LQPVVALST ESEYIS
Subjt: CYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYIS
Query: LGEAVKEVVWLKRNVGELLS
LGEA+KE VWLKR VGELLS
Subjt: LGEAVKEVVWLKRNVGELLS
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.5e-25 | 29.91 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSL----SQCPVTEQERLE-M
+++ + D + K+ KF + DL E+K +G+ ++ +K + +S+ +Y K+L KFN+ C VSTPL S+ + L C + + +
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSL----SQCPVTEQERLE-M
Query: SNIPYC------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYG-NVVSWKVTLQPV
I C A++++SR+ S E W +K VLRY KG+ + L + K+ + G+ D D+ R+S +G++F+++ N++ W Q
Subjt: SNIPYC------YAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYG-NVVSWKVTLQPV
Query: VALSTIESEYISLGEAVKEVVWLK
VA S+ E+EY++L EAV+E +WLK
Subjt: VALSTIESEYISLGEAVKEVVWLK
|
|
| P0CV72 Secreted RxLR effector protein 161 | 1.4e-18 | 42.2 | Show/hide |
Query: AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLG
A+ ++S+F S+P HW A+K VLRY + + + L ++ R + L G++D D+ D++ RRS SG++F+L G VSW+ Q VALS+ E EY++L
Subjt: AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLG
Query: EAVKEVVWL
EA +E VWL
Subjt: EAVKEVVWL
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.1e-47 | 40.68 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
M++V KD I +LK S F++KDLG ++ILGM + R+R L +S+E Y ++LE+FN+ K VSTPLA + S CP T +E+ M+ +PY
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY
Query: ------------------CYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
+A+ ++SRF+ NP KEHW AVKW+LRY +G+ LC+ +L+G+TD D D+D R+S +G++F G +SW+
Subjt: ------------------CYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWK
Query: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGEL
LQ VALST E+EYI+ E KE++WLKR + EL
Subjt: VTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGEL
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 9.7e-17 | 28.82 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSL-SQCPVTEQ---------
+++ D ++ S +F VKD EL LG++ KR L +S+ Y + LL + N+ K V+TP+A + SL S +T+
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSL-SQCPVTEQ---------
Query: -ERLEMSNIPYCYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVV
+ L + YA++ +S+FM P +EH A+K +LRY G+ + + K S L ++D D+ D D S +G+I L + +SW Q V
Subjt: -ERLEMSNIPYCYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVV
Query: ALSTIESEYISLGEAVKEVVWLKRNVGEL
S+ E+EY S+ E+ W+ + EL
Subjt: ALSTIESEYISLGEAVKEVVWLKRNVGEL
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 3.0e-18 | 28.38 | Show/hide |
Query: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSL---SQCPVTEQERLEMSN
+++ D V + S +F VK+ +L LG++ KR + L +S+ Y + LL + N+ K V+TP+A+ + +L ++ P + R + +
Subjt: MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSL---SQCPVTEQERLEMSN
Query: IPY--------CYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVV
+ Y YA++ +S++M P +HWNA+K VLRY G+ + K S L ++D D+ D D S +G+I L + +SW Q V
Subjt: IPY--------CYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVV
Query: ALSTIESEYISLGEAVKEVVWLKRNVGEL
S+ E+EY S+ E+ W+ + EL
Subjt: ALSTIESEYISLGEAVKEVVWLKRNVGEL
|
|
