CuGenDBv2

Gene ID	Cmc08g0226731
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr08:19127571..19127999
RNA-Seq Expression	Cmc08g0226731
Synteny	Cmc08g0226731
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043826.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.3e-56

80.28

Show/hide

Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNV YVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KLK   R+ L+VLEGT V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKH TK ILDY+H DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

2.7e-57

80.99

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Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT V GSAAIAS KVT+MSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKHTTK ILDYIH DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

9.2e-58

80.99

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Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKHTTK ILDY+H DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

9.2e-58

80.99

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Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKHTTK ILDY+H DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

9.2e-58

80.99

Show/hide

Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKHTTK ILDY+H DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TP18 Putative gag-pol polyprotein

6.4e-57

80.28

Show/hide

Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNV YVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KLK   R+ L+VLEGT V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKH TK ILDY+H DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

1.3e-57

80.99

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Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT V GSAAIAS KVT+MSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKHTTK ILDYIH DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

A0A5A7UB25 Putative gag-pol polyprotein

4.4e-58

80.99

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Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKHTTK ILDY+H DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

A0A5D3CTV2 Putative polyprotein

4.4e-58

80.99

Show/hide

Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKHTTK ILDY+H DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

A0A5D3DNU1 Putative gag-pol polyprotein

4.4e-58

80.99

Show/hide

Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLL
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
        GGVK+VELPFCEHCIMGKST VKFG+GKHTTK ILDY+H DL
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.7e-17

33.1

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Query:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL
        +L +VR+VP+L+ NLI    LD+ GY     N+  ++TKGSL+  K   R  L+     +  G    A ++++    LWHKR+ H+SE+GLQ  +++ L+
Subjt:  MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLL

Query:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL
           K   +  C++C+ GK   V F        +ILD ++ D+
Subjt:  GGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

P93293 Uncharacterized mitochondrial protein AtMg00300

1.2e-20

44.04

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Query:  VMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKD
        V+KV KG    LK N+ ++L++L+G+V  G + +A     D + LWH RL H+S+RG++   ++G L   K   L FCE CI GK+  V F  G+HTTK+
Subjt:  VMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKD

Query:  ILDYIHLDL
         LDY+H DL
Subjt:  ILDYIHLDL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00300.1 Gag-Pol-related retrotransposon family protein

8.6e-22

44.04

Show/hide

Query:  VMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKD
        V+KV KG    LK N+ ++L++L+G+V  G + +A     D + LWH RL H+S+RG++   ++G L   K   L FCE CI GK+  V F  G+HTTK+
Subjt:  VMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKD

Query:  ILDYIHLDL
         LDY+H DL
Subjt:  ILDYIHLDL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTCACTAATGTAAGGTATGTTCCAGAACTTAAACATAATCTAATATTTCTTGGTGAATTAGATAAATCAGGTTATACCATAAAACTTGAGAATAGAGTTATGAAAGT
TACCAAGGGTTCTTTGATTAAACTGAAGGAAAACAAGAGAAATGCTCTGCATGTGTTGGAAGGTACTGTAGTTTTAGGTAGTGCTGCTATTGCATCAAACAAAGTTACAG
ATATGTCAATGTTATGGCACAAAAGGCTAGTTCATGTGAGTGAAAGAGGTTTACAAGCATTTTCTCAACAAGGTTTGCTGGGAGGAGTTAAAGATGTTGAACTCCCATTT
TGTGAGCATTGTATAATGGGAAAGTCTACCGGAGTAAAGTTTGGCAGAGGGAAGCATACAACCAAAGATATTTTGGATTATATTCATTTAGATTTGTAG

mRNA sequence

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Protein sequence

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MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPF
CEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

Cmc08g0226731 (gene) of Melon (Charmono) v1.1 genome