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Cmc08g0226861 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0226861
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr08:19356404..19356751
RNA-Seq ExpressionCmc08g0226861
SyntenyCmc08g0226861
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026295.1 putative Gag-pol protein [Cucumis melo var. makuwa]6.5e-5492.98Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+KYPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRM
        TTFRTRYGHYEFR+
Subjt:  TTFRTRYGHYEFRM

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-5392.11Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+KYPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRM
        T FRTRYGHYEFR+
Subjt:  TTFRTRYGHYEFRM

KAA0041120.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-5398.17Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGH
        TTFRTR  H
Subjt:  TTFRTRYGH

TYK21915.1 putative 22 kDa kafirin cluster [Cucumis melo var. makuwa]1.7e-5494.74Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        M PSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCI  RQLNKV IRDKYPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRM
        TTFRTRYGHYEFR+
Subjt:  TTFRTRYGHYEFRM

TYK27290.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-5392.11Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+KYPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRM
        T FRTRYGHYEFR+
Subjt:  TTFRTRYGHYEFRM

TrEMBL top hitse value%identityAlignment
A0A5A7SPH3 Putative Gag-pol protein3.2e-5492.98Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+KYPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRM
        TTFRTRYGHYEFR+
Subjt:  TTFRTRYGHYEFRM

A0A5A7TCW4 DNA/RNA polymerases superfamily protein5.4e-5498.17Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGH
        TTFRTR  H
Subjt:  TTFRTRYGH

A0A5A7U2V7 Reverse transcriptase1.2e-5392.11Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+KYPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRM
        T FRTRYGHYEFR+
Subjt:  TTFRTRYGHYEFRM

A0A5D3BS67 Reverse transcriptase1.2e-5392.11Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+KYPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRM
        T FRTRYGHYEFR+
Subjt:  TTFRTRYGHYEFRM

A0A5D3DEE2 Putative 22 kDa kafirin cluster8.3e-5594.74Show/hide
Query:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK
        M PSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCI  RQLNKV IRDKYPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRM
        TTFRTRYGHYEFR+
Subjt:  TTFRTRYGHYEFRM

SwissProt top hitse value%identityAlignment
P10394 Retrovirus-related Pol polyprotein from transposon 4127.1e-1940.87Show/hide
Query:  SKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDG------TLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESD
        S+++E++ Q+Q+L+    + PSVS + +P+L + KK          +L ID RQ+NK ++ DK+PLPRIDD+ DQ   A  FS +DL SG+HQ+++ E  
Subjt:  SKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDG------TLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESD

Query:  IAKTTFRTRYGHYEF
           T+F T  G Y F
Subjt:  IAKTTFRTRYGHYEF

P20825 Retrovirus-related Pol polyprotein from transposon 2971.0e-1737.27Show/hide
Query:  ELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKD-----GTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTT
        E++ Q+QE++++G IR S SP+ +P   + KK         ++ ID R+LN++ I D+YP+P +D++  +      F+ IDL  G+HQ+++ E  I+KT 
Subjt:  ELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKD-----GTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTT

Query:  FRTRYGHYEF
        F T+ GHYE+
Subjt:  FRTRYGHYEF

P31843 RNA-directed DNA polymerase homolog1.0e-1754.79Show/hide
Query:  TLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM
        +L++CID R L KV I++KYP+PR+DDLFD+   A  F+K+DLRSGY Q+++ + D  KTT  TRYG +EFR+
Subjt:  TLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.1e-2246.23Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR
        +E+   +Q+L+D  +I PS SP  +PV+ + KKDGT +LC+D R LNK  I D +PLPRID+L  +   A +F+ +DL SGYHQ+ +   D  KT F T 
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR

Query:  YGHYEF
         G YE+
Subjt:  YGHYEF

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.1e-2246.23Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR
        +E+   +Q+L+D  +I PS SP  +PV+ + KKDGT +LC+D R LNK  I D +PLPRID+L  +   A +F+ +DL SGYHQ+ +   D  KT F T 
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR

Query:  YGHYEF
         G YE+
Subjt:  YGHYEF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAAGCAAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAGTGCTATTTATGAA
AAAGAAAGATGGTACCCTCAAATTATGTATTGACTGTAGACAGTTAAACAAGGTTATAATACGTGACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACGAA
GGGGAGCAGCATTGTTTTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTCAGAACGAGGTATGGGCATTAT
GAGTTTCGAATGTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAAGCAAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAGTGCTATTTATGAA
AAAGAAAGATGGTACCCTCAAATTATGTATTGACTGTAGACAGTTAAACAAGGTTATAATACGTGACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACGAA
GGGGAGCAGCATTGTTTTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTCAGAACGAGGTATGGGCATTAT
GAGTTTCGAATGTGCTAG
Protein sequenceShow/hide protein sequence
MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHY
EFRMC