CuGenDBv2

Gene ID	Cmc08g0226901
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr08:19456401..19457406
RNA-Seq Expression	Cmc08g0226901
Synteny	Cmc08g0226901
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

1.2e-179

99.05

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI MAPFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LSTVHDVFHVSMLRK
Subjt:  LSTVHDVFHVSMLRK

KAA0043401.1 pol protein [Cucumis melo var. makuwa]

6.2e-179

98.41

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI MAPFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LS VHDVFH+SMLRK
Subjt:  LSTVHDVFHVSMLRK

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

1.2e-179

99.05

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI MAPFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LSTVHDVFHVSMLRK
Subjt:  LSTVHDVFHVSMLRK

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

1.4e-178

98.41

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI M PFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LS VHDVFHVSMLRK
Subjt:  LSTVHDVFHVSMLRK

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

6.2e-179

98.41

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI MAPFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LSTVHDVFHVSMLRK
Subjt:  LSTVHDVFHVSMLRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TPA9 Pol protein

3.0e-179

98.41

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI MAPFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LS VHDVFH+SMLRK
Subjt:  LSTVHDVFHVSMLRK

A0A5A7U7V9 Reverse transcriptase

6.0e-180

99.05

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI MAPFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LSTVHDVFHVSMLRK
Subjt:  LSTVHDVFHVSMLRK

A0A5A7VDP3 Pol protein

6.7e-179

98.41

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI M PFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LS VHDVFHVSMLRK
Subjt:  LSTVHDVFHVSMLRK

A0A5A7VJE2 Reverse transcriptase

3.0e-179

98.41

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI MAPFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPM+GV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LSTVHDVFHVSMLRK
Subjt:  LSTVHDVFHVSMLRK

Q84KB0 Pol protein

6.0e-180

99.05

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE+VSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC
        VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI MAPFEALYGRCCRSPVC
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVC

Query:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
        WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS
Subjt:  WGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS

Query:  LSTVHDVFHVSMLRK
        LSTVHDVFHVSMLRK
Subjt:  LSTVHDVFHVSMLRK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.8e-49

35.85

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WES+SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV
          I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV

Query:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
           E+        E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

Query:  PSLSTV-HDVFHVSMLRK
         S+  +    FHVS L K
Subjt:  PSLSTV-HDVFHVSMLRK

P0CT35 Transposon Tf2-2 polyprotein

2.8e-49

35.85

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WES+SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV
          I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV

Query:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
           E+        E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

Query:  PSLSTV-HDVFHVSMLRK
         S+  +    FHVS L K
Subjt:  PSLSTV-HDVFHVSMLRK

P0CT36 Transposon Tf2-3 polyprotein

2.8e-49

35.85

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WES+SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV
          I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV

Query:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
           E+        E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

Query:  PSLSTV-HDVFHVSMLRK
         S+  +    FHVS L K
Subjt:  PSLSTV-HDVFHVSMLRK

P0CT41 Transposon Tf2-12 polyprotein

2.8e-49

35.85

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WES+SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV
          I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV

Query:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
           E+        E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

Query:  PSLSTV-HDVFHVSMLRK
         S+  +    FHVS L K
Subjt:  PSLSTV-HDVFHVSMLRK

Q9UR07 Transposon Tf2-11 polyprotein

2.8e-49

35.85

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+   E  WES+SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP

Query:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV
          I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+
Subjt:  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRC-CRSPV

Query:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP
           E+        E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP
Subjt:  CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALP

Query:  PSLSTV-HDVFHVSMLRK
         S+  +    FHVS L K
Subjt:  PSLSTV-HDVFHVSMLRK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAGAGAAGTAGCAGAATTTGTTAGTAAATGCCTGGTATGTCAGCAGGTTAAGGCACCAAGACAGAAACCAGCGGGTTTATTACAGCCTTTGAGCATACCGGAATG
GAAGTGGGAGAGCGTGTCCATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAGTCAGCGCACTTTG
TTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCGCAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCCGATAGAGATGCCCGT
TTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGT
TTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGACA
TGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAA
GCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAAATGGGGGATAAGGTGTTCTT
AAAGGTCGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATCCTGGAGCGGATTGGCCCTGTAGCTTACC
GCTTGGCGTTGCCTCCATCACTCTCGACAGTTCATGATGTGTTTCACGTTTCTATGTTGAGGAAATTGATGAAAACTTGA

mRNA sequence

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Protein sequence

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MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWESVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAR
FTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIDMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNE
AIQKIRSRMHTAQSRQKSYADVRRKDLEFEMGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKLMKT

Cmc08g0226901 (gene) of Melon (Charmono) v1.1 genome