; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0227261 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0227261
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr08:20155173..20155847
RNA-Seq ExpressionCmc08g0227261
SyntenyCmc08g0227261
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039128.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-11292.56Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        +PNQ+PINVRPYKYGH+QK EIE LV EMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDY KLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDIL Y+SDITEH+KHLGMVFA+LRDN LYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVK
        RIQYLGHQISKAGV+
Subjt:  RIQYLGHQISKAGVK

KAA0041185.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]1.8e-12499.55Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVY+SDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVKRMMIKLEV
        RIQYLGHQISKAGVKRMMIKLEV
Subjt:  RIQYLGHQISKAGVKRMMIKLEV

TYK14624.1 uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]8.3e-11493.95Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        +PNQRPINVRPYKYGHVQK EIENLV EMLQDGIIRPSRSPYSS VLLVKKKDGGWRFCVDYRKLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDILVY+SD+TEHEKHLGM+FA+LRDN+LYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVK
        RIQYLGHQISKAGV+
Subjt:  RIQYLGHQISKAGVK

TYK28905.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-11293.02Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        MPNQRPINVRPYKYGHVQK EIE LV EMLQDGIIRPSRSPYSSPVLLVKKKDGGW FCVDYRKLNQATVSDKF IP+IEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAP TFQSLMN+VFKPFLRRCVLVFFDDILVY+SDITEHEKHLGMVF  LRDN+LYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVK
        +IQYLGHQISKAGV+
Subjt:  RIQYLGHQISKAGVK

TYK29308.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]8.3e-11493.95Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        +PNQRPINVRPYKYGHVQK EIENLV EMLQDGIIRPSRSPYSS VLLVKKKDGGWRFCVDYRKLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDILVY+SD+TEHEKHLGM+FA+LRDN+LYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVK
        RIQYLGHQISKAGV+
Subjt:  RIQYLGHQISKAGVK

TrEMBL top hitse value%identityAlignment
A0A5A7T8C0 Ty3/gypsy retrotransposon protein1.7e-11292.56Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        +PNQ+PINVRPYKYGH+QK EIE LV EMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDY KLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDIL Y+SDITEH+KHLGMVFA+LRDN LYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVK
        RIQYLGHQISKAGV+
Subjt:  RIQYLGHQISKAGVK

A0A5A7TIE4 Putative retroelement pol polyprotein8.7e-12599.55Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVY+SDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVKRMMIKLEV
        RIQYLGHQISKAGVKRMMIKLEV
Subjt:  RIQYLGHQISKAGVKRMMIKLEV

A0A5D3CUL0 Reverse transcriptase domain-containing protein4.0e-11493.95Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        +PNQRPINVRPYKYGHVQK EIENLV EMLQDGIIRPSRSPYSS VLLVKKKDGGWRFCVDYRKLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDILVY+SD+TEHEKHLGM+FA+LRDN+LYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVK
        RIQYLGHQISKAGV+
Subjt:  RIQYLGHQISKAGVK

A0A5D3DZZ7 Ty3/gypsy retrotransposon protein1.3e-11293.02Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        MPNQRPINVRPYKYGHVQK EIE LV EMLQDGIIRPSRSPYSSPVLLVKKKDGGW FCVDYRKLNQATVSDKF IP+IEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAP TFQSLMN+VFKPFLRRCVLVFFDDILVY+SDITEHEKHLGMVF  LRDN+LYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVK
        +IQYLGHQISKAGV+
Subjt:  RIQYLGHQISKAGVK

A0A5D3E0Q7 Transposon Ty3-G Gag-Pol polyprotein4.0e-11493.95Show/hide
Query:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        +PNQRPINVRPYKYGHVQK EIENLV EMLQDGIIRPSRSPYSS VLLVKKKDGGWRFCVDYRKLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSG
Subjt:  MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        YHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDILVY+SD+TEHEKHLGM+FA+LRDN+LYANHKKCVFAHS
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVK
        RIQYLGHQISKAGV+
Subjt:  RIQYLGHQISKAGVK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.0e-4642.59Show/hide
Query:  YKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRM
        Y Y    ++E+E+ + +ML  GIIR S SPY+SP+ +V KK        +R  +DYRKLN+ TV D+  IP ++E+L +L     F+ +DL  G+HQI M
Subjt:  YKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRM

Query:  KEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHSRIQYLG
          E + KT F T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+V+++ + EH + LG+VF  L    L     KC F      +LG
Subjt:  KEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHSRIQYLG

Query:  HQISKAGVKRMMIKLE
        H ++  G+K    K+E
Subjt:  HQISKAGVKRMMIKLE

P20825 Retrovirus-related Pol polyprotein from transposon 2973.7e-4842.79Show/hide
Query:  PINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG
        PI  + Y      + E+EN V EML  G+IR S SPY+SP  +V KK        +R  +DYRKLN+ T+ D++ IP ++E+L +L     F+ +DL  G
Subjt:  PINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSG

Query:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS
        +HQI M EE I KT F T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+++++ +TEH   + +VF  L D  L     KC F   
Subjt:  YHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHS

Query:  RIQYLGHQISKAGVKRMMIKLE
           +LGH ++  G+K   IK++
Subjt:  RIQYLGHQISKAGVKRMMIKLE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.5e-4646.15Show/hide
Query:  PNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGY
        P  R   ++PY      ++EI  +V ++L +  I PS+SP SSPV+LV KKDG +R CVDYR LN+AT+SD F +P I+ LL  +  A +F+ LDL SGY
Subjt:  PNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGY

Query:  HQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHSR
        HQI M+ +D  KT F T  G YE+ VMPFGL NAP+TF   M   F+    R V V+ DDIL+++    EH KHL  V   L++  L    KKC FA   
Subjt:  HQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHSR

Query:  IQYLGHQI
         ++LG+ I
Subjt:  IQYLGHQI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.5e-4441.94Show/hide
Query:  QRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKK-----DGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLK
        Q PI  + Y Y    + E+E  + E+LQDGIIRPS SPY+SP+ +V KK     +  +R  VD+++LN  T+ D + IP I   L  L  A  F+ LDL 
Subjt:  QRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKK-----DGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLK

Query:  SGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFA
        SG+HQI MKE DI KT F T  G YEFL +PFGL NAPA FQ +++ + +  + +   V+ DDI+V++ D   H K+L +V A L    L  N +K  F 
Subjt:  SGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFA

Query:  HSRIQYLGHQISKAGVK
         +++++LG+ ++  G+K
Subjt:  HSRIQYLGHQISKAGVK

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.5e-4646.15Show/hide
Query:  PNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGY
        P  R   ++PY      ++EI  +V ++L +  I PS+SP SSPV+LV KKDG +R CVDYR LN+AT+SD F +P I+ LL  +  A +F+ LDL SGY
Subjt:  PNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGY

Query:  HQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHSR
        HQI M+ +D  KT F T  G YE+ VMPFGL NAP+TF   M   F+    R V V+ DDIL+++    EH KHL  V   L++  L    KKC FA   
Subjt:  HQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHSR

Query:  IQYLGHQI
         ++LG+ I
Subjt:  IQYLGHQI

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein1.9e-0760Show/hide
Query:  VQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGW
        +++  ++N + EML+  II+PS SPYSSPVLLV+KKDGGW
Subjt:  VQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAACCAAAGACCGATCAATGTACGACCATATAAATATGGACATGTCCAGAAAGAAGAGATAGAGAATTTAGTGATTGAAATGCTACAAGATGGAATCATCCGACC
AAGTCGTAGCCCGTATTCAAGCCCTGTTCTATTGGTTAAAAAGAAAGATGGAGGGTGGCGATTTTGTGTGGACTACCGAAAGTTGAATCAAGCTACAGTTTCAGACAAGT
TTCTCATTCCAGTAATCGAAGAATTACTAGATGAACTGTATGGAGCTGCTGTATTCTCTAAATTGGACCTCAAATCAGGATACCACCAAATTAGAATGAAGGAGGAAGAT
ATAGAAAAGACAACATTCCGCACCCATGAAGGCCACTATGAATTTCTGGTGATGCCTTTCGGTCTCACAAACGCTCCAGCAACATTCCAATCATTGATGAATAAGGTTTT
TAAACCCTTCCTTAGACGTTGTGTTTTGGTATTCTTTGACGATATCTTAGTGTACAACAGTGACATAACTGAACACGAGAAACACCTAGGAATGGTTTTCGCCATGCTAA
GGGATAATCGGCTCTATGCAAATCACAAGAAATGTGTCTTTGCTCATTCTAGAATCCAATATTTGGGACACCAAATATCCAAGGCAGGGGTGAAGCGGATGATGATAAAA
TTAGAAGTATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAACCAAAGACCGATCAATGTACGACCATATAAATATGGACATGTCCAGAAAGAAGAGATAGAGAATTTAGTGATTGAAATGCTACAAGATGGAATCATCCGACC
AAGTCGTAGCCCGTATTCAAGCCCTGTTCTATTGGTTAAAAAGAAAGATGGAGGGTGGCGATTTTGTGTGGACTACCGAAAGTTGAATCAAGCTACAGTTTCAGACAAGT
TTCTCATTCCAGTAATCGAAGAATTACTAGATGAACTGTATGGAGCTGCTGTATTCTCTAAATTGGACCTCAAATCAGGATACCACCAAATTAGAATGAAGGAGGAAGAT
ATAGAAAAGACAACATTCCGCACCCATGAAGGCCACTATGAATTTCTGGTGATGCCTTTCGGTCTCACAAACGCTCCAGCAACATTCCAATCATTGATGAATAAGGTTTT
TAAACCCTTCCTTAGACGTTGTGTTTTGGTATTCTTTGACGATATCTTAGTGTACAACAGTGACATAACTGAACACGAGAAACACCTAGGAATGGTTTTCGCCATGCTAA
GGGATAATCGGCTCTATGCAAATCACAAGAAATGTGTCTTTGCTCATTCTAGAATCCAATATTTGGGACACCAAATATCCAAGGCAGGGGTGAAGCGGATGATGATAAAA
TTAGAAGTATGGTAA
Protein sequenceShow/hide protein sequence
MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEED
IEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIK
LEVW