; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0227401 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0227401
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description54S ribosomal protein L37, mitochondrial-like
Genome locationCMiso1.1chr08:20457072..20460778
RNA-Seq ExpressionCmc08g0227401
SyntenyCmc08g0227401
Gene Ontology termsGO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR013870 - Ribosomal protein L37, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649745.1 hypothetical protein Csa_012025 [Cucumis sativus]2.0e-5993.89Show/hide
Query:  LSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRK
        +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  LSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRK

Query:  NAESLPYADLRRFVKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLRRFVKLDTRARIKENNSIKAK
XP_004144674.3 39S ribosomal protein L54, mitochondrial [Cucumis sativus]2.0e-5993.89Show/hide
Query:  LSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRK
        +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  LSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRK

Query:  NAESLPYADLRRFVKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLRRFVKLDTRARIKENNSIKAK
XP_008442187.1 PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]1.6e-64100Show/hide
Query:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
        MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
Subjt:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR

Query:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
        RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
Subjt:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
XP_016899597.1 PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]1.6e-64100Show/hide
Query:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
        MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
Subjt:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR

Query:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
        RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
Subjt:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
XP_038883607.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida]8.0e-5688.72Show/hide
Query:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
        M +SQIR FRR+ IV+SKDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKAS LSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR

Query:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
        RKN E+LPY DL+RFVKLDTRA+IKENNS KAK
Subjt:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
TrEMBL top hitse value%identityAlignment
A0A0A0KYS4 Uncharacterized protein1.3e-5993.13Show/hide
Query:  LSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRK
        +SQ+R FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  LSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRK

Query:  NAESLPYADLRRFVKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLRRFVKLDTRARIKENNSIKAK
A0A1S3B544 54S ribosomal protein L37, mitochondrial isoform X27.8e-65100Show/hide
Query:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
        MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
Subjt:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR

Query:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
        RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
Subjt:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
A0A1S4DUD4 39S ribosomal protein L54, mitochondrial isoform X17.8e-65100Show/hide
Query:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
        MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
Subjt:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR

Query:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
        RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
Subjt:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
A0A5D3CXE8 39S ribosomal protein L547.8e-65100Show/hide
Query:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
        MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
Subjt:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR

Query:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
        RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
Subjt:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
A0A6J1JQ61 54S ribosomal protein L37, mitochondrial-like2.7e-4980.45Show/hide
Query:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR
        M +SQIR FRR+++ ++KDLI+LT+VR+FAAGGK KKGSKGGAA DAPKASILSKEVKSTTVVGANILKEGADPK+MADSEYP WLW L+DK P LSELR
Subjt:  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELR

Query:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
        RK+A++LPY DL+RFVKLDTRARIKENNS KAK
Subjt:  RKNAESLPYADLRRFVKLDTRARIKENNSIKAK
SwissProt top hitse value%identityAlignment
Q9CPW3 39S ribosomal protein L54, mitochondrial3.0e-0537.5Show/hide
Query:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDTRARIKENNSI
        KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+  ++  PP  +L     ES  Y  L R   +    R+ +N  +
Subjt:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDTRARIKENNSI
Arabidopsis top hitse value%identityAlignment
AT3G01740.1 Mitochondrial ribosomal protein L371.2e-4171.19Show/hide
Query:  SSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRF
        SSKD+++ T     AA  K+KKG KGG A+DAPK S L+KE+KSTTVVGAN LK+G+DPKI+ DS+YP WLWHLLDK P LSELRRKN E+LPY DL+RF
Subjt:  SSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRF

Query:  VKLDTRARIKENNSIKAK
        VKLDTR +IKENNSIKAK
Subjt:  VKLDTRARIKENNSIKAK
AT5G14290.1 Mitochondrial ribosomal protein L374.9e-3560.61Show/hide
Query:  LSQIRFFRRNIIVSSKDLIQLTSVRSFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRR
        ++ IR F  + I  SKD+++    R+FA A GK+KK  +G    DAPKAS LSKE+KS+ VV AN LK+G DPKI+ +S++P +LWHLLDK P LSELRR
Subjt:  LSQIRFFRRNIIVSSKDLIQLTSVRSFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRR

Query:  KNAESLPYADLRRFVKLDTRARIKENNSIKAK
        KN E+L + DL+RFVKLDTRARIKEN+SIKAK
Subjt:  KNAESLPYADLRRFVKLDTRARIKENNSIKAK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTGAGCCAAATTAGATTTTTTAGAAGGAACATTATTGTCAGTAGCAAAGATCTAATACAACTGACGTCGGTGCGATCATTTGCTGCCGGGGGAAAATCAAAGAA
GGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACGACTGTAGTTGGTGCCAATATTCTCAAGGAAGGTGCAGATC
CAAAAATTATGGCAGACTCAGAATACCCTGCTTGGCTGTGGCATTTGCTTGATAAGCATCCACCTCTAAGTGAATTACGAAGGAAGAATGCTGAAAGTCTTCCTTATGCA
GATCTCAGACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGTAA
mRNA sequenceShow/hide mRNA sequence
GTTGCCCTTTCCTTAAGCCCACTACCAAGTACCAGCCACCTTCATCTCCATTCCCCATCCCTCCATCTCTTTCATCTCGCATTTCTCCTCTCGCATATCCTCTTTTGTTC
CCTTTTCTTCCATCTCTTCGATCTCCACCGCCACGCCGGCCAATATCAATCATCTCCTCTTCTTCCATTTCTCAGGACACTTCCCAATATCAATCCTTCCCAACATCAAT
CCCAAATCAAACTAGCACAAGGCATGAACTTGAAGAAATGAAAAATTGAAAGACCATAAAATTTCAATCTTACGAACTTGAAGAGGAAAGGGGAAAAACTCTAGCAGGCG
TAGGAGAGCTGACTACGGAGGCAGGCGAGAGAAAAAGAAAAAAATGGGTTTGAGCCAAATTAGATTTTTTAGAAGGAACATTATTGTCAGTAGCAAAGATCTAATACAAC
TGACGTCGGTGCGATCATTTGCTGCCGGGGGAAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCT
ACGACTGTAGTTGGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAATACCCTGCTTGGCTGTGGCATTTGCTTGATAAGCATCCACCTCT
AAGTGAATTACGAAGGAAGAATGCTGAAAGTCTTCCTTATGCAGATCTCAGACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCA
AGTAACAATATAGTAGAGGCAGACTTTGTTTTTGTTTCTTTTGTGAATGTAATGCAACTCTTTATCAAACTTTGTATCAATGTGCAAGTCCCGACTTGCATTCTCTCCCT
TTTAGTTACTGTCTGTTTTCCAAGTCCATTTTAATGTACTAATTTCAGATGAAATTCGACAAGTTCGGCTTAATTTGAAAGCCAATCTTGTTATATTTCTTTTGCTTTTG
CAGTAAAAATGAGAGTTGGAGAGTTAAGTCAATCTTGTTATATTCCACTTGAATGCATGAATGTCCCCTTTGAGCAAATTTATGAAAATAGAATCTGAAAGATTTTTTTT
TTTAATTTTTTTTTAAACAACACAGTTTACATGGAAATCAACACCTTTGAAGCTTCATATTTGAAATTGAACAAGTTCCATACGTTTACCCTTACTTTATATGTTTCACC
GATGATATTTTCACCGATTATCAAAAATTACATTAACATAATTCTCAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTAAGATAATTCTCATAAGCAAA
ATTAAGAAGAGTGAGTGTGTTCGTGATTCTAAGGAGCTCTACACAATGGGCAAGAGTTGTTGATTTGAAGCCATGTAAGGACGCATGATTTGTGATACACATGACCACAT
GGAATCCTACTCACCTCCTTCCCCTTTCCTTTTAGCTCTTCATAACAAACACTGCAATCTCCGATTTCTTCTTCTTCTTCTTCTTTATTAAACCCATCAAATTTCTGCTT
CATTATTAATCTCTCAATCGCAGACTCCGGCGCCCCTCTTGTCCTTGGGGGTGGAGTTTCTTGAAATCCTTGCTCTCCGATGATCAAGTCCTCCACATGATCGATGTTGG
CTTCAATTTTGAAGCTCGGAAGAATGGCACGAAACTGTAAAGCAAAGGAGAGAATCTCGTGACAAATGGTTCGGCGAACAGAGGAATGTAGGTTGAAGGAACACAGAAAC
TGATTAACCAAAAATTGAATTGATTGTTGTTGTCGAGGATGGCGGAGATTAGAAAAAGGAATCAAAGTGTCCCCCATGAGGGTTGAGGGAGTCTGTTGAATTATTTGATC
TGAAATGACGAGACGGCTGGAATACCGAAATCGAACAATGAGGAATTGATGGGTGGTTTGGAGAGGCGGAAAGAGAACAATGAAAGGAAGAAGAAGTACAGAGAGACATG
ATGATGCAGGTAAAAGAGTGGAATGGAATGGAATTGATTGGGGGAAACAGAGTTTTTGATTCACCAACGGCTATCATCCCAACGGCTCTTTTTTCTTTCTTGGGAGTCAA
GTTTTGGTAAGGGCTGTTTTCCTCCGCATTGCGTCCATCCTCCTCCGTCCCCCACACCATT
Protein sequenceShow/hide protein sequence
MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYA
DLRRFVKLDTRARIKENNSIKAK