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Cmc08g0227411 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0227411
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionATP-dependent RNA helicase RhlB
Genome locationCMiso1.1chr08:20477213..20479657
RNA-Seq ExpressionCmc08g0227411
SyntenyCmc08g0227411
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3468472.1 unnamed protein product [Digitaria exilis]7.6e-0436.56Show/hide
Query:  MKVVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGR----RHILREAHGRQVVIGV
        ++VVEP+RG V  L + L+R  ++++V DELER + +  P     +    GR + +H+EEE++A +AG  +G     R  LR   G  V  GV
Subjt:  MKVVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGR----RHILREAHGRQVVIGV

GER26076.1 translation initiation factor IF-3 [Striga asiatica]5.1e-0839.25Show/hide
Query:  VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCID
        +V+P+R RV +L +GL+   N+S+V DEL+  + ++ P + Q++ +   R + + +EEE+KAR++G E+GRR IL +A G Q        +VEV  H + 
Subjt:  VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCID

Query:  EGDSRGG
        E  SRGG
Subjt:  EGDSRGG

GER26080.1 ATP-dependent RNA helicase RhlB [Striga asiatica]2.5e-1039.25Show/hide
Query:  VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCID
        +V+P+R RV +L +GL+   N+S+V DEL+  Q ++ P + +++ +   R + + +EEE++AR++G E+GRR +L E+HG +   G    +VEVG H + 
Subjt:  VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCID

Query:  EGDSRGG
        E  SRGG
Subjt:  EGDSRGG

KAG6603286.1 hypothetical protein SDJN03_03895, partial [Cucurbita argyrosperma subsp. sororia]1.6e-0667.31Show/hide
Query:  MEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGDSRGG
        MEEEI+ARI+GGEK  RHILREAH RQ +I V ID+V VG   IDEG + GG
Subjt:  MEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGDSRGG

TrEMBL top hitse value%identityAlignment
A0A5A7NZZ3 Translation initiation factor IF-32.5e-0839.25Show/hide
Query:  VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCID
        +V+P+R RV +L +GL+   N+S+V DEL+  + ++ P + Q++ +   R + + +EEE+KAR++G E+GRR IL +A G Q        +VEV  H + 
Subjt:  VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCID

Query:  EGDSRGG
        E  SRGG
Subjt:  EGDSRGG

A0A5A7P019 ATP-dependent RNA helicase RhlB1.2e-1039.25Show/hide
Query:  VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCID
        +V+P+R RV +L +GL+   N+S+V DEL+  Q ++ P + +++ +   R + + +EEE++AR++G E+GRR +L E+HG +   G    +VEVG H + 
Subjt:  VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCID

Query:  EGDSRGG
        E  SRGG
Subjt:  EGDSRGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTGTAGAGCCAGAGCGCGGCCGTGTAGTATCCCTCTTTATCGGACTTTCCCGTACCACGAACTCCTCGCAGGTTACAGATGAGCTTGAGCGTCATCAA
GGGATTATGATTCCAAGCCAAACTCAATCTGTCGATCAAAGAAATGGCAGGGGTATCAGGAACCACATGGAAGAAGAAATCAAGGCAAGGATTGCCGGTGGAGAG
AAAGGTCGCCGACATATTCTCCGTGAAGCCCATGGGCGGCAGGTTGTCATCGGAGTGGTTATTGATGTTGTTGAAGTTGGCGAGCATTGCATCGACGAAGGGGAC
TCCAGAGGGGGTTGA
mRNA sequenceShow/hide mRNA sequence
CCAAATAAACCAAACAAATTTCTATTACTTCCCTTGTTCTTTCTTTCAAAAAAAAGTCAGGAGTCACAATCTACACTTCAATTCCGAATGAAACAGAATGTATCT
CTTACATTTACACCATCCATCCATCCATCCGTTGTCAAGAATTGATAGTAAAACAACAACAGTGAAATTAGTTTTGGATTTAAAAAAATAATATATATCATTTAT
AGAATTCAAGAGTGTGCAGCACAACGCCAAAAACCATGCCTTGTTCTTCACTATTTTTTACATTTTTTTCCTTCTATACTTTCCCTATAATGGAAAAAGAAAAAC
AGCAAAATTATTGTATTGTGTATCTTGATTGATCAATCAAGAACAACAAGCTTCTGGTACTCATTGCCGGAGATAGCTTGCTCCATGACGGCTTCCGGTTGAATG
ACGCCATCACCATCCAAAAACAAGTTCATCAAGTTCTTTGAGTATCCACTGACCAAAGCCACCCCCTTCTCCTTGCCCGGCACTGGCGTCGCCCTCGAATCTCTT
AAGTTCCAAAACACAATCTGTGGAACAGCTGATCCATACCCTTTTTCTGTGAATTTTCTGACTATAACTTGGTAATCTGTTTCCCACGAGGTGGCTGATGCTTGA
TCGAACTCCATGTCACTGAACACAAACACTCTCTTTATCATTTGTTCTTCCTTCAACTTTCCATCTACAGCCACTTTGAGAATTTGATCAAAAACCTTCTGAAAA
TCAGTATTAACCCCCCAATGCATCGTCTTAACGAACTCCGCTTTTGATTTCAGACTGTCCCCTTGGATCACATGAAGTTCTGGGTTTGCACTGAATGTGATCACT
TTCCCTTTCCATGGATCTTCGCTCAATTCAGAAACCAAAAGACCCAAAGCAATACAAACATCCATGGGAATCCCCTCCATACTTCCGGACACATCACAAACAGCA
ATACAGTCTCTCAACTTCCCTTTCTTCAACAAGTCATCCACCATTCTCTTCCATTGAAGCTCTGCAACTTCTCCACCGTCTTCCTGTCCGTCGAATAAAGACATT
ATGATCTCGTGAGGAAGCAGTGCTCCGGCGGCGATCTTGGTCTTACCGTCCTTCACGTCTTTCAAGTATTGGGCAAACCGCTCCCCATCGTGTTTCATGAACTTT
TCCTTGTAGTTTTTCATTGCAACAGAAGCTACTCTGTTGTAAGGGATCGAATCCCATCGATTGGCTCCAATGTAAACCTCCGGCAGCTCCAAAACCTTCCGGAGT
GGCACCAAAACATCCTTCCTCAATCTGTCGCGAACTCTGTACGCATAGTGCGCCTCTTCAATCCCTTCGTATTCTGGATCCGATTCGCGAGGGAAAACTTTCCGC
GCTATGCTCTCGCAGAGTAGTGTCGATCGATCAAAGGACGAATCGACGGAAGGGCACCATTTCGCAGCGAGACTGATTCTCGTGAAATCTCCGGAATTCATAAAT
TGAAGATCAGATTTCAAGCAATCAGTGAAGAAGTCAGAGATTCGATCGTGCAAGAGTTGGAAATTTGGATCAGATTGGAAACGTTCCATAACCTTCCTCGCCATC
GAAACCTTCCTTAACTTCCTCTCTGCGCTCGCCTTCTCTTTTTCTATCCTCGATTTCTCCATTGCCTTCGAAATGTTGGCCTCCCTGTCTATTGAAGATTGAATT
TCTTTCTTCCTCGTCTTCGGTTTCTCTTGCTTGAAGCTTCCATATCTGACAGATAGCCCCCCTCTCCTAGGCGACGACAATCTCTTTCGACTCTTACCTTTCCTC
TCCCCCCACTCTTTCTTCTGATTCTTCCTCACATCGGAACCCTCAAGAAGCCGGTAGAGTATCTCCGGCAGATCCTTGAAATAACCGAAATCAGCGATAGAAGGA
ATGTTACCTGCTAGGGTTTTGGGATGAAAGTTGTAGAGCCAGAGCGCGGCCGTGTAGTATCCCTCTTTATCGGACTTTCCCGTACCACGAACTCCTCGCAGGTTA
CAGATGAGCTTGAGCGTCATCAAGGGATTATGATTCCAAGCCAAACTCAATCTGTCGATCAAAGAAATGGCAGGGGTATCAGGAACCACATGGAAGAAGAAATCA
AGGCAAGGATTGCCGGTGGAGAGAAAGGTCGCCGACATATTCTCCGTGAAGCCCATGGGCGGCAGGTTGTCATCGGAGTGGTTATTGATGTTGTTGAAGTTGGCG
AGCATTGCATCGACGAAGGGGACTCCAGAGGGGGTTGATTCCGTTGGTTGGAGTGAGACGGGGGCTGATTCCGTTGGTTGGAGTGAGACGGGGGAAGCGGCGAGG
TAGAGCTCCGGGGGACCGAGAAGGCTTGGAGGAGCCATGGGAATGGGCAAGGAGAAATCGGCAAGGAATGAGGATTTAATGAAAGGTTATGGGTTTCATTTCATT
TATTGACAATTTGATGCTTCGGGACCAAGA
Protein sequenceShow/hide protein sequence
MKVVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGD
SRGG