; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0227471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0227471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr08:20548494..20549591
RNA-Seq ExpressionCmc08g0227471
SyntenyCmc08g0227471
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]4.4e-20597.26Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRP KYGH+QKEEIEKLVTEMLQTGIIRPSHSPFSS VLLVKKKDGGWRFCVDYRKLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        IADKF I VIEELLDELHGATVFSKLDLKSGY QIRMKEED EKTAF THEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        TKHERHLGMVFAILRDNQLYANR KCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLKS MTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

KAA0063362.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]5.4e-20395.62Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDI TTLPPKRAVDHRIFTMPG+KPINV+PYKYGH+QKEEIEKLVT+MLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        IADKF I VIEELLDELHGATVFSKLDLKSGYHQIRMKEED EKTAFRTHEGHYEFMVMPF LTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        T+HERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISK GVE DQDKVRCMLQWPQPKDITGLRGFLG TGYYRRFVKSYGEIAAPLTKLL KNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLKS MTTIPVLALPDWSLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

KAA0065995.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.1e-20395.89Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDI TTLPPKRAVDHRIFTMPG+KPINVRPYKYGH+QKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDY KLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        IADKF I VIEELLDELHGATVFSKLDLKSGYHQIRMKEED EKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVL+FFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        T+HERHLGMVFAILRDNQLYANRKKCVFAHSQI YLGHIISKHGVEADQDKVR MLQWPQP+DITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLK  MTTIPVL LPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

TYK16028.1 uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]1.3e-20496.99Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRP KYGH+QKEEIEKLVTEMLQTGIIRPSHSPFSS VLLVKKKDGGWRFCVDYRKLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        I DKF I VIEELLDELHGATVFSKLDLKSGY QIRMKEED EKTAF THEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        TKHERHLGMVFAILRDNQLYANR KCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLKS MTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

TYK28064.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.6e-20295.34Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDI TTLPPKRAVDHRIFTMPG+KPINV+PYKYGH+QKEEIEKLVT+MLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        IADKF I VIEELLDELHGATVFSKLDLKSGYHQIRMKEED EKTAFRTHEGHYEFMVMPF LTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        T+HERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISK GVE DQDKVRCMLQWPQPKDITGLRGFLG TGYYRRFVKSYGEIAAPLTKLL KNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLKS MTTIPVL LPDWSLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein2.1e-20597.26Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRP KYGH+QKEEIEKLVTEMLQTGIIRPSHSPFSS VLLVKKKDGGWRFCVDYRKLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        IADKF I VIEELLDELHGATVFSKLDLKSGY QIRMKEED EKTAF THEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        TKHERHLGMVFAILRDNQLYANR KCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLKS MTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

A0A5A7V529 Transposon Ty3-G Gag-Pol polyprotein2.6e-20395.62Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDI TTLPPKRAVDHRIFTMPG+KPINV+PYKYGH+QKEEIEKLVT+MLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        IADKF I VIEELLDELHGATVFSKLDLKSGYHQIRMKEED EKTAFRTHEGHYEFMVMPF LTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        T+HERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISK GVE DQDKVRCMLQWPQPKDITGLRGFLG TGYYRRFVKSYGEIAAPLTKLL KNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLKS MTTIPVLALPDWSLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

A0A5A7VJU2 Ty3/gypsy retrotransposon protein2.0e-20395.89Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDI TTLPPKRAVDHRIFTMPG+KPINVRPYKYGH+QKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDY KLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        IADKF I VIEELLDELHGATVFSKLDLKSGYHQIRMKEED EKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVL+FFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        T+HERHLGMVFAILRDNQLYANRKKCVFAHSQI YLGHIISKHGVEADQDKVR MLQWPQP+DITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLK  MTTIPVL LPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

A0A5D3CXP0 Uncharacterized protein6.2e-20596.99Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRP KYGH+QKEEIEKLVTEMLQTGIIRPSHSPFSS VLLVKKKDGGWRFCVDYRKLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        I DKF I VIEELLDELHGATVFSKLDLKSGY QIRMKEED EKTAF THEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        TKHERHLGMVFAILRDNQLYANR KCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLKS MTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

A0A5D3DX13 Transposon Ty3-G Gag-Pol polyprotein7.6e-20395.34Show/hide
Query:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
        MIQFLLNQYSDVFDI TTLPPKRAVDHRIFTMPG+KPINV+PYKYGH+QKEEIEKLVT+MLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT
Subjt:  MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKIT

Query:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
        IADKF I VIEELLDELHGATVFSKLDLKSGYHQIRMKEED EKTAFRTHEGHYEFMVMPF LTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI
Subjt:  IADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI

Query:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF
        T+HERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISK GVE DQDKVRCMLQWPQPKDITGLRGFLG TGYYRRFVKSYGEIAAPLTKLL KNAF
Subjt:  TKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAF

Query:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA
        KWDENATLAFESLKS MTTIPVL LPDWSLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRA
Subjt:  KWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.9e-7339.6Show/hide
Query:  DHRIFTMPGRKPINVR-------PYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGG-----WRFCVDYRKLNKITIADKFSILVIEEL
        D   FT   +  IN +        Y Y    ++E+E  + +ML  GIIR S+SP++SP+ +V KK        +R  +DYRKLN+IT+ D+  I  ++E+
Subjt:  DHRIFTMPGRKPINVR-------PYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGG-----WRFCVDYRKLNKITIADKFSILVIEEL

Query:  LDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITKHERHLGMVFAI
        L +L     F+ +DL  G+HQI M  E   KTAF T  GHYE++ MPFGL NAPATFQ  MN + +P L +  LV+ DDI+V+S+ + +H + LG+VF  
Subjt:  LDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITKHERHLGMVFAI

Query:  LRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL--AFE
        L    L     KC F   +  +LGH+++  G++ + +K+  + ++P P     ++ FLGLTGYYR+F+ ++ +IA P+TK L+KN      N     AF+
Subjt:  LRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL--AFE

Query:  SLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLS
         LK +++  P+L +PD++  F + TDAS   LGAVLSQ+GHP+++ S+ L+
Subjt:  SLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLS

P20825 Retrovirus-related Pol polyprotein from transposon 2973.1e-7643.41Show/hide
Query:  PINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGG-----WRFCVDYRKLNKITIADKFSILVIEELLDELHGATVFSKLDLKSG
        PI  + Y      + E+E  V EML  G+IR S+SP++SP  +V KK        +R  +DYRKLN+ITI D++ I  ++E+L +L     F+ +DL  G
Subjt:  PINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGG-----WRFCVDYRKLNKITIADKFSILVIEELLDELHGATVFSKLDLKSG

Query:  YHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITKHERHLGMVFAILRDNQLYANRKKCVFAHS
        +HQI M EE   KTAF T  GHYE++ MPFGL NAPATFQ  MN + +P L +  LV+ DDI+++S+ +T+H   + +VF  L D  L     KC F   
Subjt:  YHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITKHERHLGMVFAILRDNQLYANRKKCVFAHS

Query:  QIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA---TLAFESLKSVMTTIPVLALPDW
        + ++LGHI++  G++ +  KV+ ++ +P P     +R FLGLTGYYR+F+ +Y +IA P+T  L+K   K D        AFE LK+++   P+L LPD+
Subjt:  QIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA---TLAFESLKSVMTTIPVLALPDW

Query:  SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLS
           F++ TDAS   LGAVLSQNGHPI+F S+ L+
Subjt:  SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLS

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.1e-6540.06Show/hide
Query:  FLLNQYSDVFDILTTLPPKRA------VDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLN
        +L  +Y ++  I   LPP+ A      V H I   PG +   ++PY    + ++EI K+V ++L    I PS SP SSPV+LV KKDG +R CVDYR LN
Subjt:  FLLNQYSDVFDILTTLPPKRA------VDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLN

Query:  KITIADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYS
        K TI+D F +  I+ LL  +  A +F+ LDL SGYHQI M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   M   F+    R V V+ DDIL++S
Subjt:  KITIADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYS

Query:  SDITKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQK
            +H +HL  V   L++  L   +KKC FA  +  +LG+ I    +   Q K   +  +P PK +   + FLG+  YYRRF+ +  +IA P+ +L   
Subjt:  SDITKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQK

Query:  NAFKWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQ
        +  +W E    A E LK+ +   PVL   +    + + TDAS  G+GAVL +
Subjt:  NAFKWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQ

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.3e-7038.02Show/hide
Query:  MIQFLLNQYSDVFD-ILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKK-----DGGWRFCVDYR
        ++  LL ++  +F+  L+ +  + AV   I T   + PI  + Y Y    + E+E+ + E+LQ GIIRPS+SP++SP+ +V KK     +  +R  VD++
Subjt:  MIQFLLNQYSDVFD-ILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKK-----DGGWRFCVDYR

Query:  KLNKITIADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDIL
        +LN +TI D + I  I   L  L  A  F+ LDL SG+HQI MKE D  KTAF T  G YEF+ +PFGL NAPA FQ +++ + +  + +   V+ DDI+
Subjt:  KLNKITIADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDIL

Query:  VYSSDITKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKL
        V+S D   H ++L +V A L    L  N +K  F  +Q+ +LG+I++  G++AD  KVR + + P P  +  L+ FLG+T YYR+F++ Y ++A PLT L
Subjt:  VYSSDITKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKL

Query:  LQ------------KNAFKWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQN----GHPIAFFSQKLS
         +            K     DE A  +F  LKS++ +  +LA P ++ PF + TDAS   +GAVLSQ+      PIA+ S+ L+
Subjt:  LQ------------KNAFKWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQN----GHPIAFFSQKLS

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.2e-6539.77Show/hide
Query:  FLLNQYSDVFDILTTLPPKRA------VDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLN
        +L  +Y ++  I   LPP+ A      V H I   PG +   ++PY    + ++EI K+V ++L    I PS SP SSPV+LV KKDG +R CVDYR LN
Subjt:  FLLNQYSDVFDILTTLPPKRA------VDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLN

Query:  KITIADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYS
        K TI+D F +  I+ LL  +  A +F+ LDL SGYHQI M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   M   F+    R V V+ DDIL++S
Subjt:  KITIADKFSILVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYS

Query:  SDITKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQK
            +H +HL  V   L++  L   +KKC FA  +  +LG+ I    +   Q K   +  +P PK +   + FLG+  YYRRF+ +  +IA P+ +L   
Subjt:  SDITKHERHLGMVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQK

Query:  NAFKWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQ
        +  +W E    A + LK  +   PVL   +    + + TDAS  G+GAVL +
Subjt:  NAFKWDENATLAFESLKSVMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQ

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein1.5e-0656.41Show/hide
Query:  QKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGW
        ++  ++  + EML+  II+PS SP+SSPVLLV+KKDGGW
Subjt:  QKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGW

ATMG00860.1 DNA/RNA polymerases superfamily protein2.3e-4263.08Show/hide
Query:  HLGMVFAILRDNQLYANRKKCVFAHSQIHYLG--HIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWD
        HLGMV  I   +Q YANRKKC F   QI YLG  HIIS  GV AD  K+  M+ WP+PK+ T LRGFLGLTGYYRRFVK+YG+I  PLT+LL+KN+ KW 
Subjt:  HLGMVFAILRDNQLYANRKKCVFAHSQIHYLG--HIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWD

Query:  ENATLAFESLKSVMTTIPVLALPDWSLPFM
        E A LAF++LK  +TT+PVLALPD  LPF+
Subjt:  ENATLAFESLKSVMTTIPVLALPDWSLPFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCAGTTCTTACTTAATCAGTATTCGGATGTGTTTGACATCCTTACCACTTTGCCACCAAAGAGAGCTGTCGATCATCGCATATTCACCATGCCAGGGCGGAAGCC
AATCAATGTCCGGCCATATAAATACGGCCATCGACAGAAGGAAGAGATAGAGAAACTGGTCACCGAAATGCTGCAGACCGGAATCATTAGACCAAGTCACAGCCCTTTCT
CAAGTCCAGTGTTGTTAGTCAAGAAAAAAGATGGGGGCTGGAGGTTTTGCGTGGATTACAGGAAGCTGAACAAAATTACAATAGCCGATAAATTCTCCATTCTAGTTATT
GAAGAACTCTTGGATGAATTACATGGGGCAACGGTGTTCTCCAAGCTAGACTTAAAATCAGGCTACCATCAAATCCGAATGAAAGAAGAAGATACCGAGAAGACTGCGTT
TAGGACACATGAAGGCCATTATGAATTCATGGTAATGCCATTTGGATTAACAAACGCACCCGCCACTTTCCAATCCCTCATGAATCAGGTATTTAAGCCTTTCCTCCGAC
GTTGTGTATTGGTTTTCTTTGATGATATACTGGTTTATAGTTCGGACATAACGAAGCATGAGAGACACTTAGGGATGGTGTTTGCAATACTAAGAGATAACCAATTATAT
GCTAATCGCAAGAAATGTGTTTTCGCTCATTCGCAAATACACTACTTGGGCCATATTATTTCAAAACATGGGGTAGAAGCAGACCAAGATAAGGTTAGATGTATGCTACA
ATGGCCACAACCTAAAGATATAACAGGCTTAAGAGGGTTTTTAGGGCTGACGGGCTATTATAGACGCTTTGTCAAAAGTTATGGTGAGATTGCAGCACCCTTGACCAAAC
TACTGCAGAAGAATGCTTTCAAATGGGATGAGAACGCCACCCTTGCATTTGAAAGTCTGAAATCAGTTATGACTACCATACCCGTACTCGCACTACCCGATTGGTCTTTG
CCTTTTATGATAGAGACTGATGCCTCAGGCAGTGGATTGGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGCATTCTTCAGCCAGAAGTTGTCTCCAAGGGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCAGTTCTTACTTAATCAGTATTCGGATGTGTTTGACATCCTTACCACTTTGCCACCAAAGAGAGCTGTCGATCATCGCATATTCACCATGCCAGGGCGGAAGCC
AATCAATGTCCGGCCATATAAATACGGCCATCGACAGAAGGAAGAGATAGAGAAACTGGTCACCGAAATGCTGCAGACCGGAATCATTAGACCAAGTCACAGCCCTTTCT
CAAGTCCAGTGTTGTTAGTCAAGAAAAAAGATGGGGGCTGGAGGTTTTGCGTGGATTACAGGAAGCTGAACAAAATTACAATAGCCGATAAATTCTCCATTCTAGTTATT
GAAGAACTCTTGGATGAATTACATGGGGCAACGGTGTTCTCCAAGCTAGACTTAAAATCAGGCTACCATCAAATCCGAATGAAAGAAGAAGATACCGAGAAGACTGCGTT
TAGGACACATGAAGGCCATTATGAATTCATGGTAATGCCATTTGGATTAACAAACGCACCCGCCACTTTCCAATCCCTCATGAATCAGGTATTTAAGCCTTTCCTCCGAC
GTTGTGTATTGGTTTTCTTTGATGATATACTGGTTTATAGTTCGGACATAACGAAGCATGAGAGACACTTAGGGATGGTGTTTGCAATACTAAGAGATAACCAATTATAT
GCTAATCGCAAGAAATGTGTTTTCGCTCATTCGCAAATACACTACTTGGGCCATATTATTTCAAAACATGGGGTAGAAGCAGACCAAGATAAGGTTAGATGTATGCTACA
ATGGCCACAACCTAAAGATATAACAGGCTTAAGAGGGTTTTTAGGGCTGACGGGCTATTATAGACGCTTTGTCAAAAGTTATGGTGAGATTGCAGCACCCTTGACCAAAC
TACTGCAGAAGAATGCTTTCAAATGGGATGAGAACGCCACCCTTGCATTTGAAAGTCTGAAATCAGTTATGACTACCATACCCGTACTCGCACTACCCGATTGGTCTTTG
CCTTTTATGATAGAGACTGATGCCTCAGGCAGTGGATTGGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGCATTCTTCAGCCAGAAGTTGTCTCCAAGGGCCTAA
Protein sequenceShow/hide protein sequence
MIQFLLNQYSDVFDILTTLPPKRAVDHRIFTMPGRKPINVRPYKYGHRQKEEIEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKITIADKFSILVI
EELLDELHGATVFSKLDLKSGYHQIRMKEEDTEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITKHERHLGMVFAILRDNQLY
ANRKKCVFAHSQIHYLGHIISKHGVEADQDKVRCMLQWPQPKDITGLRGFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKSVMTTIPVLALPDWSL
PFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRA