; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0227481 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0227481
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr08:20549619..20550644
RNA-Seq ExpressionCmc08g0227481
SyntenyCmc08g0227481
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046359.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-18292.96Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLSVQKWRHYLL RRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDH +ELKA+ST G VDME VTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQL+ QQLQT+P+LEGKYSL NG LMYKGRVVLSKSSS+IPSLLHTFHDSI GGHSGFLRTYKRMSGELFWKGMK DIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GVLQPLPIPDRILEDW MDFIEGLPK  GMNVIMVVVDRLSKYAYFVTMK PFSAKQVA+EFIDKIVRRHGIPKSIISDRDKIF+SNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

KAA0056659.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-18293.55Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLSVQKWRHYLL RRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDH +ELKA+ST G VDME VTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQL+ QQLQT+P+LEGKYSL NG LMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMK DIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GVLQPLPIPDRILEDW MDFIEGLPKA GMNVIMVVVDRLSKYAYFVTMK PFSAKQVAIEFIDKIVRRH IPKSIISDRDKIF+SNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTA HPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

KAA0059481.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-18192.96Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLSVQKWRHYLL RRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDH +ELKA+ST G VDME VTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQL+ QQLQT+P+LEGKYSL NG LMYKGRVVLSKSSS+IPSLLHTFHDSI GGHSGFLRTYKRMSGELFWKGMK DIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GVLQPLPIPDRILEDW MDFIEGLPKA GMNVIMVVVDRLSKYAYFVTMK PFSAKQV +EFIDKIVRRHGIPKSIISDRDKIF+SNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

KAA0063362.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]8.9e-18495.31Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLS+QKW+HYLL RRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DALSRMDHQL LKAMST   V+METVTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQLIAQQLQTDPSLEGKYS LNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GV QPLPIPDRILEDW MDFIEGLPKA GMNVIMVVVDRLSKYAYFVTMK PFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTAFH QTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

TYK28064.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]8.9e-18495.31Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLS+QKW+HYLL RRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DALSRMDHQL LKAMST   V+METVTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQLIAQQLQTDPSLEGKYS LNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GV QPLPIPDRILEDW MDFIEGLPKA GMNVIMVVVDRLSKYAYFVTMK PFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTAFH QTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

TrEMBL top hitse value%identityAlignment
A0A5A7TYN3 Ty3/gypsy retrotransposon protein3.1e-18292.96Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLSVQKWRHYLL RRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDH +ELKA+ST G VDME VTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQL+ QQLQT+P+LEGKYSL NG LMYKGRVVLSKSSS+IPSLLHTFHDSI GGHSGFLRTYKRMSGELFWKGMK DIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GVLQPLPIPDRILEDW MDFIEGLPK  GMNVIMVVVDRLSKYAYFVTMK PFSAKQVA+EFIDKIVRRHGIPKSIISDRDKIF+SNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

A0A5A7UT21 Ty3/gypsy retrotransposon protein3.1e-18293.55Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLSVQKWRHYLL RRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDH +ELKA+ST G VDME VTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQL+ QQLQT+P+LEGKYSL NG LMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMK DIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GVLQPLPIPDRILEDW MDFIEGLPKA GMNVIMVVVDRLSKYAYFVTMK PFSAKQVAIEFIDKIVRRH IPKSIISDRDKIF+SNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTA HPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

A0A5A7V194 Ty3/gypsy retrotransposon protein5.3e-18292.96Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLSVQKWRHYLL RRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDH +ELKA+ST G VDME VTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQL+ QQLQT+P+LEGKYSL NG LMYKGRVVLSKSSS+IPSLLHTFHDSI GGHSGFLRTYKRMSGELFWKGMK DIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GVLQPLPIPDRILEDW MDFIEGLPKA GMNVIMVVVDRLSKYAYFVTMK PFSAKQV +EFIDKIVRRHGIPKSIISDRDKIF+SNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

A0A5A7V529 Transposon Ty3-G Gag-Pol polyprotein4.3e-18495.31Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLS+QKW+HYLL RRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DALSRMDHQL LKAMST   V+METVTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQLIAQQLQTDPSLEGKYS LNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GV QPLPIPDRILEDW MDFIEGLPKA GMNVIMVVVDRLSKYAYFVTMK PFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTAFH QTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

A0A5D3DX13 Transposon Ty3-G Gag-Pol polyprotein4.3e-18495.31Show/hide
Query:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE
        MAVVLS+QKW+HYLL RRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DALSRMDHQL LKAMST   V+METVTKEV KDE
Subjt:  MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDE

Query:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
        ELQLIAQQLQTDPSLEGKYS LNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA
Subjt:  ELQLIAQQLQTDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPA

Query:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
        GV QPLPIPDRILEDW MDFIEGLPKA GMNVIMVVVDRLSKYAYFVTMK PFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL
Subjt:  GVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTIL

Query:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
        KRSTAFH QTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP
Subjt:  KRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKWHQFIP

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.7e-4933.62Show/hide
Query:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST
        +A++ S++ WRHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N  ADALSR+  + E             +  +S 
Subjt:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST

Query:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY
              + VT+     + L L+  +   D  +E    L +G L+  K +++L   + L  +++  +H+     H G       +     WKG++  I++Y
Subjt:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY

Query:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK
        V+ C  CQ NKS   KP G LQP+P  +R  E  +MDFI  LP++ G N + VVVDR SK A  V   +  +A+Q A  F  +++   G PK II+D D 
Subjt:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK

Query:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW
        IF S  WK+  +  + ++K S  + PQTDGQTER NQ +E  LRC C+  PN W
Subjt:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW

P0CT35 Transposon Tf2-2 polyprotein6.7e-4933.62Show/hide
Query:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST
        +A++ S++ WRHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N  ADALSR+  + E             +  +S 
Subjt:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST

Query:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY
              + VT+     + L L+  +   D  +E    L +G L+  K +++L   + L  +++  +H+     H G       +     WKG++  I++Y
Subjt:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY

Query:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK
        V+ C  CQ NKS   KP G LQP+P  +R  E  +MDFI  LP++ G N + VVVDR SK A  V   +  +A+Q A  F  +++   G PK II+D D 
Subjt:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK

Query:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW
        IF S  WK+  +  + ++K S  + PQTDGQTER NQ +E  LRC C+  PN W
Subjt:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW

P0CT36 Transposon Tf2-3 polyprotein6.7e-4933.62Show/hide
Query:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST
        +A++ S++ WRHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N  ADALSR+  + E             +  +S 
Subjt:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST

Query:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY
              + VT+     + L L+  +   D  +E    L +G L+  K +++L   + L  +++  +H+     H G       +     WKG++  I++Y
Subjt:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY

Query:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK
        V+ C  CQ NKS   KP G LQP+P  +R  E  +MDFI  LP++ G N + VVVDR SK A  V   +  +A+Q A  F  +++   G PK II+D D 
Subjt:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK

Query:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW
        IF S  WK+  +  + ++K S  + PQTDGQTER NQ +E  LRC C+  PN W
Subjt:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW

P0CT41 Transposon Tf2-12 polyprotein6.7e-4933.62Show/hide
Query:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST
        +A++ S++ WRHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N  ADALSR+  + E             +  +S 
Subjt:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST

Query:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY
              + VT+     + L L+  +   D  +E    L +G L+  K +++L   + L  +++  +H+     H G       +     WKG++  I++Y
Subjt:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY

Query:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK
        V+ C  CQ NKS   KP G LQP+P  +R  E  +MDFI  LP++ G N + VVVDR SK A  V   +  +A+Q A  F  +++   G PK II+D D 
Subjt:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK

Query:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW
        IF S  WK+  +  + ++K S  + PQTDGQTER NQ +E  LRC C+  PN W
Subjt:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW

Q9UR07 Transposon Tf2-11 polyprotein6.7e-4933.62Show/hide
Query:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST
        +A++ S++ WRHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N  ADALSR+  + E             +  +S 
Subjt:  MAVVLSVQKWRHYLLE--RRFTIISDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLE-------------LKAMST

Query:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY
              + VT+     + L L+  +   D  +E    L +G L+  K +++L   + L  +++  +H+     H G       +     WKG++  I++Y
Subjt:  VGTVDMETVTKEVAKDEELQLIAQQLQTDPSLEGKYSLLNGKLM-YKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKY

Query:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK
        V+ C  CQ NKS   KP G LQP+P  +R  E  +MDFI  LP++ G N + VVVDR SK A  V   +  +A+Q A  F  +++   G PK II+D D 
Subjt:  VEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDFIEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDK

Query:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW
        IF S  WK+  +  + ++K S  + PQTDGQTER NQ +E  LRC C+  PN W
Subjt:  IFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCNEQPNKW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTAGTACTATCAGTGCAGAAGTGGCGGCATTATCTCTTAGAAAGAAGGTTCACCATTATATCGGACCAAAAAGCTCTAAAGTTTCTATTGGAGCAGAGAGAGGT
TCAACCACAGTTCCAAAAGTGGTTAACCAAGCTGTTGGGATATGACTTTGAGATTTTATATCAACCGGGACTCCAAAATAAAGCAGCTGATGCACTTTCAAGAATGGATC
ACCAGTTGGAATTGAAAGCAATGTCCACAGTAGGAACTGTAGACATGGAAACAGTTACAAAGGAAGTTGCGAAGGATGAAGAACTTCAACTCATAGCACAACAGCTGCAG
ACTGACCCGTCACTGGAGGGAAAATATTCCTTGCTGAATGGCAAGTTAATGTATAAAGGAAGAGTGGTACTGTCCAAATCCTCTTCACTTATACCCAGCCTCTTACACAC
CTTTCACGACTCTATATTTGGAGGACATTCAGGGTTTTTGAGGACCTACAAGCGGATGAGTGGTGAGCTGTTTTGGAAGGGTATGAAGACAGATATTAAGAAATATGTCG
AACAGTGTGAAATCTGCCAAAGAAATAAAAGTGAAGCAACCAAACCGGCAGGAGTTCTTCAACCATTACCCATACCCGACCGCATATTGGAAGATTGGGCTATGGACTTC
ATAGAAGGGTTGCCTAAAGCACGGGGTATGAATGTGATTATGGTTGTGGTTGACCGGCTGAGCAAATATGCTTACTTTGTCACCATGAAACGCCCGTTCTCAGCAAAGCA
AGTAGCCATAGAATTCATTGATAAGATAGTTCGAAGACATGGCATCCCTAAGTCAATCATATCAGATAGGGATAAAATCTTTCTAAGCAACTTTTGGAAGGAATTATTCT
ATGCTATGGATACTATTCTTAAACGAAGCACCGCCTTTCATCCTCAAACCGACGGCCAGACAGAAAGGGTCAACCAGTGTTTAGAAACCTACTTAAGATGTTTCTGTAAT
GAGCAACCGAACAAATGGCATCAGTTCATACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTAGTACTATCAGTGCAGAAGTGGCGGCATTATCTCTTAGAAAGAAGGTTCACCATTATATCGGACCAAAAAGCTCTAAAGTTTCTATTGGAGCAGAGAGAGGT
TCAACCACAGTTCCAAAAGTGGTTAACCAAGCTGTTGGGATATGACTTTGAGATTTTATATCAACCGGGACTCCAAAATAAAGCAGCTGATGCACTTTCAAGAATGGATC
ACCAGTTGGAATTGAAAGCAATGTCCACAGTAGGAACTGTAGACATGGAAACAGTTACAAAGGAAGTTGCGAAGGATGAAGAACTTCAACTCATAGCACAACAGCTGCAG
ACTGACCCGTCACTGGAGGGAAAATATTCCTTGCTGAATGGCAAGTTAATGTATAAAGGAAGAGTGGTACTGTCCAAATCCTCTTCACTTATACCCAGCCTCTTACACAC
CTTTCACGACTCTATATTTGGAGGACATTCAGGGTTTTTGAGGACCTACAAGCGGATGAGTGGTGAGCTGTTTTGGAAGGGTATGAAGACAGATATTAAGAAATATGTCG
AACAGTGTGAAATCTGCCAAAGAAATAAAAGTGAAGCAACCAAACCGGCAGGAGTTCTTCAACCATTACCCATACCCGACCGCATATTGGAAGATTGGGCTATGGACTTC
ATAGAAGGGTTGCCTAAAGCACGGGGTATGAATGTGATTATGGTTGTGGTTGACCGGCTGAGCAAATATGCTTACTTTGTCACCATGAAACGCCCGTTCTCAGCAAAGCA
AGTAGCCATAGAATTCATTGATAAGATAGTTCGAAGACATGGCATCCCTAAGTCAATCATATCAGATAGGGATAAAATCTTTCTAAGCAACTTTTGGAAGGAATTATTCT
ATGCTATGGATACTATTCTTAAACGAAGCACCGCCTTTCATCCTCAAACCGACGGCCAGACAGAAAGGGTCAACCAGTGTTTAGAAACCTACTTAAGATGTTTCTGTAAT
GAGCAACCGAACAAATGGCATCAGTTCATACCATAG
Protein sequenceShow/hide protein sequence
MAVVLSVQKWRHYLLERRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHQLELKAMSTVGTVDMETVTKEVAKDEELQLIAQQLQ
TDPSLEGKYSLLNGKLMYKGRVVLSKSSSLIPSLLHTFHDSIFGGHSGFLRTYKRMSGELFWKGMKTDIKKYVEQCEICQRNKSEATKPAGVLQPLPIPDRILEDWAMDF
IEGLPKARGMNVIMVVVDRLSKYAYFVTMKRPFSAKQVAIEFIDKIVRRHGIPKSIISDRDKIFLSNFWKELFYAMDTILKRSTAFHPQTDGQTERVNQCLETYLRCFCN
EQPNKWHQFIP