CuGenDBv2

Gene ID	Cmc08g0227581
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	30S ribosomal protein S11, chloroplastic
Genome location	CMiso1.1chr08:20764393..20764659
RNA-Seq Expression	Cmc08g0227581
Synteny	Cmc08g0227581
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:1990904 - ribonucleoprotein complex (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001971 - Ribosomal protein S11 IPR018102 - Ribosomal S11, conserved site IPR036967 - Ribosomal protein S11 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QGA86353.1 ribosomal protein S11 [Xanthophyllum eurhynchum]

5.6e-21

91.38

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Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        R IT +GMQRAEVMIKGPGL RDAALRAIRRSGILLSFIRD+TPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

QKY62941.1 30S ribosomal protein S11 [Acer oblongum]

4.3e-21

82.54

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Query:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

QTA71780.1 ribosomal protein S11 [Coriaria nepalensis]

5.6e-21

91.38

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Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        RI+  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

QXO90366.1 ribosomal protein S11 [Tara cacalaco]

5.6e-21

91.38

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Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

YP_009355638.1 30S ribosomal protein S11 [Acer griseum]

4.3e-21

82.54

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Query:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

TrEMBL top hits

e value

%identity

Alignment

A0A1V0G167 30S ribosomal protein S11, chloroplastic

2.1e-21

82.54

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Query:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A0A6H0CDB5 30S ribosomal protein S11, chloroplastic

2.1e-21

82.54

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Query:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A0A7D4WH16 30S ribosomal protein S11, chloroplastic

2.1e-21

82.54

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Query:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A0A7D5A884 30S ribosomal protein S11, chloroplastic

2.1e-21

82.54

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Query:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A0A7D5B4P8 30S ribosomal protein S11, chloroplastic

2.1e-21

82.54

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Query:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

SwissProt top hits

e value

%identity

Alignment

A8SED6 30S ribosomal protein S11, chloroplastic

3.6e-23

87.93

Show/hide

Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        R +  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

B1A968 30S ribosomal protein S11, chloroplastic

3.6e-23

87.93

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Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        R +  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

P06506 30S ribosomal protein S11, chloroplastic

2.1e-23

87.93

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Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        R + ++GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Q06GW4 30S ribosomal protein S11, chloroplastic

3.6e-23

87.93

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Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        R +  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Q09WY4 30S ribosomal protein S11, chloroplastic

2.8e-23

89.66

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Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        R +  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00750.1 ribosomal protein S11

1.3e-23

86.21

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Query:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        R +  +GMQRAEV IKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Sequences

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CDS sequence

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ATGAAAAATACAAGTGCATACAAAAAATTAAGCCAACAAAAAGGGAGCTCAACTAAAGAGACTCCAACTAAACAAATTAATACCACCTATAGAATTATTACAAAGAAAGG
GATGCAACGAGCCGAAGTTATGATAAAGGGCCCCGGTCTCGAAAGAGATGCAGCATTAAGAGCTATTCGGAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCC
CTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAA

mRNA sequence

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Protein sequence

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MKNTSAYKKLSQQKGSSTKETPTKQINTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Cmc08g0227581 (gene) of Melon (Charmono) v1.1 genome