; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0227591 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0227591
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr08:20775540..20776511
RNA-Seq ExpressionCmc08g0227591
SyntenyCmc08g0227591
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN77974.1 hypothetical protein VITISV_006175 [Vitis vinifera]5.0e-14477.19Show/hide
Query:  IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNII
        +DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDLN++
Subjt:  IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNII

Query:  GTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLSAIG
        GT EEL++   YLKKEFEMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD FRP E +EELLG EVPYLSAIG
Subjt:  GTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLSAIG

Query:  ALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQTMT
        ALMYLAN TRPDIAFSVNLLARYSS+PT+RHWN +KH+LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQTM 
Subjt:  ALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQTMT

Query:  ATSSNHAEILAIHEASKECV
        ATSSNH+EILAIHEAS+EC+
Subjt:  ATSSNHAEILAIHEASKECV

RVW13569.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.5e-14577.09Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT EEL++   YLKKEFEMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD FRP E +EELLG EVPYLS
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLARYSS+PT+RHWN +KH+LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        TM ATSSNH+EILAIHEAS+EC+
Subjt:  TMTATSSNHAEILAIHEASKECV

RVW50867.1 Copia protein [Vitis vinifera]1.0e-14476.78Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT EEL++   YLKKEFEMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD FRP E +EELLG EVPYLS
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLA+YSS+PT+RHWN +KH+LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        TM ATSSNH+EILAIHEAS+EC+
Subjt:  TMTATSSNHAEILAIHEASKECV

RVW51062.1 Copia protein [Vitis vinifera]1.3e-14476.78Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT EEL++   YLKKEFEMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD FRP E +EELLG EVPYL+
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLARYSS+PT+RHWN +KH+LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        TM ATSSNH+EILAIHEAS+EC+
Subjt:  TMTATSSNHAEILAIHEASKECV

RVW59049.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.9e-14577.09Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT EEL++   YLKKEFEMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD FRP E +EELLG EVPYLS
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLARYSS+PT+RHWN +KH+LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        TM ATSSNH+EILAIHEAS+EC+
Subjt:  TMTATSSNHAEILAIHEASKECV

TrEMBL top hitse value%identityAlignment
A0A2N9FK49 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-14980.8Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT E+L+K  +YL  EFEMKDLGKTKFCL LQIEHL D I IH+STYIEK+LK F++DKAHPL+ P+VVRSLD+KKD FRP+E  EE LG EVPYLS
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKHVLRYLRGT DMGLFY NKSN  +VGYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        T++ATSSNH+EI+AIHEAS+ECV
Subjt:  TMTATSSNHAEILAIHEASKECV

A0A2N9G6F8 Reverse transcriptase Ty1/copia-type domain-containing protein5.0e-15080.8Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT EEL+K  +YLK EFEMKDLGKTKFCL LQIEHL D I IH+STY EK+LK F++DKAHPL+ P+VVRSLD+KKD FRP+E  EE LG EVPYLS
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKHVLRYLRGT DMGLFY NKSN  ++GYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        T++ATSSNH+EI+AIHEAS+ECV
Subjt:  TMTATSSNHAEILAIHEASKECV

A0A2N9I099 Reverse transcriptase Ty1/copia-type domain-containing protein1.0e-15081.42Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT EEL+K  +YLK EFEMKDLGKTKFCL LQIEHL D I IH+STYIEK+LK F++DKAHPL+ P+VVRSLD+KKD FRP+E  EE LG EVPYLS
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKHVLRYLRGT DMGLFY NKSN  +VGYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        T++ATSSNH+EI+AIHEAS+ECV
Subjt:  TMTATSSNHAEILAIHEASKECV

A0A2N9IR78 Reverse transcriptase Ty1/copia-type domain-containing protein1.0e-15081.42Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT EEL+K  +YLK EFEMKDLGKTKFCL LQIEHL D I IH+STYIEK+LK F++DKAHPL+ P+VVRSLD+KKD FRP+E  EE LG EVPYLS
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKHVLRYLRGT DMGLFY NKSN  +VGYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        T++ATSSNH+EI+AIHEAS+ECV
Subjt:  TMTATSSNHAEILAIHEASKECV

A0A2N9J4G7 Reverse transcriptase Ty1/copia-type domain-containing protein1.0e-15081.42Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWYNRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDL
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS
        N++GT EEL+K  +YLK EFEMKDLGKTKFCL LQIEHL D I IH+STYIEK+LK F++DKAHPL+ P+VVRSLD+KKD FRP+E  EE LG EVPYLS
Subjt:  NIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLS

Query:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ
        AIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKHVLRYLRGT DMGLFY NKSN  +VGYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Subjt:  AIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ

Query:  TMTATSSNHAEILAIHEASKECV
        T++ATSSNH+EI+AIHEAS+ECV
Subjt:  TMTATSSNHAEILAIHEASKECV

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.5e-4635.03Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEC-YQNNPICPCVFI--KKSQSGFAIIDVYV
        +H +DV TA+L G+L  EIYM++P+G     S NS++      KL +++YGLKQ+ R W+  + E  LKEC + N+ +  C++I  K + +    + +YV
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEC-YQNNPICPCVFI--KKSQSGFAIIDVYV

Query:  DDLNI-IGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLE-
        DD+ I  G    ++    YL ++F M DL + K  + ++IE   D+I++ +S Y++KIL +F ++  + ++ P+             P + N ELL  + 
Subjt:  DDLNI-IGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLE-

Query:  ---VPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFD--VVGYADAGYLSDPHKARSQTGYLFTCGE
            P  S IG LMY+   TRPD+  +VN+L+RYSS      W  +K VLRYL+GTIDM L +     F+  ++GY D+ +       +S TGYLF   +
Subjt:  ---VPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFD--VVGYADAGYLSDPHKARSQTGYLFTCGE

Query:  I-AISWRSVKQTMTATSSNHAEILAIHEASKECV
           I W + +Q   A SS  AE +A+ EA +E +
Subjt:  I-AISWRSVKQTMTATSSNHAEILAIHEASKECV

P0CV72 Secreted RxLR effector protein 1613.7e-2545.31Show/hide
Query:  VPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISW
        VPYLSA+GA+MYL   TRPD+A +V +L++++S P   HW  +K VLRYL+ T   GL ++      +VGY+DA +  D    RS +GYLF      +SW
Subjt:  VPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISW

Query:  RSVKQTMTATSSNHAEILAIHEASKECV
        RS KQ   A SS   E +A+ EA++E V
Subjt:  RSVKQTMTATSSNHAEILAIHEASKECV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.0e-5238.89Show/hide
Query:  IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKK-SQSGFAIIDVYVDDLNI
        +DV TA+L+G L  EIYM+ PEGF++        ++    KL +SLYGLKQ+ R WY +   ++  + Y      PCV+ K+ S++ F I+ +YVDD+ I
Subjt:  IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKK-SQSGFAIIDVYVDDLNI

Query:  IGTREEL-SKAIEYLKKEFEMKDLGKTKFCLVLQI--EHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYL
        +G  + L +K    L K F+MKDLG  +  L ++I  E  + ++++ +  YIE++L+RF +  A P++ P+    L L K +  P    E+    +VPY 
Subjt:  IGTREEL-SKAIEYLKKEFEMKDLGKTKFCLVLQI--EHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYL

Query:  SAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK
        SA+G+LMY    TRPDIA +V +++R+  +P K HW  VK +LRYLRGT    L +   S+  + GY DA    D    +S TGYLFT    AISW+S  
Subjt:  SAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK

Query:  QTMTATSSNHAEILAIHEASKECV
        Q   A S+  AE +A  E  KE +
Subjt:  QTMTATSSNHAEILAIHEASKECV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-3431.06Show/hide
Query:  IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNII
        +DV  A+L G+L +++YM  P GF          R  Y  KL+++LYGLKQ+ R WY  L  YLL   + N+     +F+ +       + VYVDD+ I 
Subjt:  IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNII

Query:  GTREE-LSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVR---SLDLKKDIFRPREDNEELLGLEVPYL
        G     L   ++ L + F +KD  +  + L ++ + +   + + +  YI  +L R  +  A P+  P+      SL     +  P E           Y 
Subjt:  GTREE-LSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVR---SLDLKKDIFRPREDNEELLGLEVPYL

Query:  SAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK
          +G+L YLA  TRPDI+++VN L+++   PT+ H   +K +LRYL GT + G+F    +   +  Y+DA +  D     S  GY+   G   ISW S K
Subjt:  SAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK

Query:  QTMTATSSNHAEILAIHEASKE
        Q     SS  AE  ++   S E
Subjt:  QTMTATSSNHAEILAIHEASKE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.0e-3632.19Show/hide
Query:  IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNII
        +DV  A+L G+L +E+YM  P GF          R  Y  +L++++YGLKQ+ R WY  L  YLL   + N+     +F+ +       + VYVDD+ I 
Subjt:  IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNII

Query:  GTREELSK-AIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVR-SLDLKKDIFRPREDNEELLGLEVPYLSA
        G    L K  ++ L + F +K+     + L ++ + +   + + +  Y   +L R  +  A P+  P+     L L      P  D  E  G+       
Subjt:  GTREELSK-AIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVR-SLDLKKDIFRPREDNEELLGLEVPYLSA

Query:  IGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQT
        +G+L YLA  TRPD++++VN L++Y   PT  HWN +K VLRYL GT D G+F    +   +  Y+DA +  D     S  GY+   G   ISW S KQ 
Subjt:  IGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQT

Query:  MTATSSNHAEILAIHEASKE
            SS  AE  ++   S E
Subjt:  MTATSSNHAEILAIHEASKE

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.1e-3530.75Show/hide
Query:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL
        +H +D+  A+L G L  EIYMK+P G+   +  +     +  +K  +S+YGLKQ+ R W+ + S  L+   +  +      F+K + + F  + VYVDD+
Subjt:  MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDL

Query:  NIIGTRE-ELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYL
         I    +  + +    LK  F+++DLG  K+ L L+I   A  I I +  Y   +L    +    P ++P       +   +        + +  +  Y 
Subjt:  NIIGTRE-ELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYL

Query:  SAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK
          IG LMYL   TR DI+F+VN L+++S +P   H   V  +L Y++GT+  GLFYS+++   +  ++DA + S     RS  GY    G   ISW+S K
Subjt:  SAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK

Query:  QTMTATSSNHAEILAIHEASKE
        Q + + SS  AE  A+  A+ E
Subjt:  QTMTATSSNHAEILAIHEASKE

ATMG00240.1 Gag-Pol-related retrotransposon family protein1.2e-1041.77Show/hide
Query:  MYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGY
        MYL   TRPD+ F+VN L+++SS+        V  VL Y++GT+  GLFYS  S+  +  +AD+ + S P   RS TG+
Subjt:  MYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGY

ATMG00810.1 DNA/RNA polymerases superfamily protein1.5e-2130.18Show/hide
Query:  VYVDDLNIIGTREE-LSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLG
        +YVDD+ + G+    L+  I  L   F MKDLG   + L +QI+     +F+ ++ Y E+IL    +    P++ P+    L L   +   +  +     
Subjt:  VYVDDLNIIGTREE-LSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLG

Query:  LEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAI
            + S +GAL YL   TRPDI+++VN++ +    PT   ++ +K VLRY++GTI  GL+    S  +V  + D+ +       RS TG+    G   I
Subjt:  LEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAI

Query:  SWRSVKQTMTATSSNHAEILAI
        SW + +Q   + SS   E  A+
Subjt:  SWRSVKQTMTATSSNHAEILAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCTTATAGATGTAGTTACAGCATACTTATATGGATCTTTGGTAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTC
TAGAGAATTATATTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAATGTTATCAAA
ATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGATGTATATGTTGATGATTTAAATATAATTGGAACTCGTGAAGAGCTTTCA
AAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGTCTTACAAATCGAGCATTTAGCCGATGAAATTTTTATTCATCG
ATCAACATATATAGAAAAGATTTTAAAAAGATTCTACGTGGACAAAGCACACCCATTGAACATTCCAATTGTGGTTCGATCACTAGATCTAAAAAAGGATATCTTTCGAC
CTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTACCGTACCTTAGTGCGATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTA
AATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAA
TAAATCAAACTTTGATGTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGAAATTGCTATAT
CTTGGCGGTCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAAAGAATGTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATCTTATAGATGTAGTTACAGCATACTTATATGGATCTTTGGTAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTC
TAGAGAATTATATTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAATGTTATCAAA
ATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGATGTATATGTTGATGATTTAAATATAATTGGAACTCGTGAAGAGCTTTCA
AAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGTCTTACAAATCGAGCATTTAGCCGATGAAATTTTTATTCATCG
ATCAACATATATAGAAAAGATTTTAAAAAGATTCTACGTGGACAAAGCACACCCATTGAACATTCCAATTGTGGTTCGATCACTAGATCTAAAAAAGGATATCTTTCGAC
CTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTACCGTACCTTAGTGCGATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTA
AATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAA
TAAATCAAACTTTGATGTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGAAATTGCTATAT
CTTGGCGGTCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAAAGAATGTGTATGA
Protein sequenceShow/hide protein sequence
MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELS
KAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSV
NLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQTMTATSSNHAEILAIHEASKECV