CuGenDBv2

Gene ID	Cmc08g0227601
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr08:20793756..20795572
RNA-Seq Expression	Cmc08g0227601
Synteny	Cmc08g0227601
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR041588 - Integrase zinc-binding domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR000477 - Reverse transcriptase domain IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026271.1 pol protein [Cucumis melo var. makuwa]

8.7e-310

90.08

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQGNDPYLVEKR LAEAG+AVEFS+SSDG LLFER LCVPSDSA KTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        +CLVCQQVKAPRQKP GLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIV LH VPVSIVSD+DAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

90.25

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQ NDPYLVEKRGLAEAG+AVEFS+SSDG LLFERRLCVPSDS VKTELLS+AHSSPFSMHPGSTKMY+D+KRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIV LHGVPVSIVSDRDAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

KAA0056702.1 pol protein [Cucumis melo var. makuwa]

1.1e-308

89.92

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Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYA+FSK EFWLKQVSFLGHVVSKAGVSVDPAKIEAV GWTRPSTVSEVRSFLGL GYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQ NDPYLVEKRGLAEAG+AVEFS+SSDG LLFER LCVPSDSAVKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIW VVDRLTKSAHFVPGKSTYTASKWAQLYMSEIV LHGVPVSIVSDRDAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

KAA0062112.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

90.25

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHE HLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQ NDPYLVEKRGLAEAG+AVEFS+SSDG LLFERRLCVPSDSAVKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT+SKWAQLYMSEIV LHGVPVSIVSDRDAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

TYK01613.1 pol protein [Cucumis melo var. makuwa]

4.4e-310

90.08

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQ NDPYLVEKRGLAEAG+  EFS+SSDG LLFERRLCVPSDSAVKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        +CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIV LHGVPVSIVSDRDAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPZ2 Pol protein

4.2e-310

90.08

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQGNDPYLVEKR LAEAG+AVEFS+SSDG LLFER LCVPSDSA KTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        +CLVCQQVKAPRQKP GLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIV LH VPVSIVSD+DAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

A0A5A7U330 Reverse transcriptase

0.0e+00

90.25

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQ NDPYLVEKRGLAEAG+AVEFS+SSDG LLFERRLCVPSDS VKTELLS+AHSSPFSMHPGSTKMY+D+KRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIV LHGVPVSIVSDRDAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

A0A5A7ULI8 Pol protein

5.5e-309

89.92

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYA+FSK EFWLKQVSFLGHVVSKAGVSVDPAKIEAV GWTRPSTVSEVRSFLGL GYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQ NDPYLVEKRGLAEAG+AVEFS+SSDG LLFER LCVPSDSAVKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIW VVDRLTKSAHFVPGKSTYTASKWAQLYMSEIV LHGVPVSIVSDRDAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

A0A5A7V1N3 Reverse transcriptase

0.0e+00

90.25

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHE HLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQ NDPYLVEKRGLAEAG+AVEFS+SSDG LLFERRLCVPSDSAVKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT+SKWAQLYMSEIV LHGVPVSIVSDRDAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

A0A5D3BPI1 Reverse transcriptase

2.1e-310

90.08

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        MRLCID+ ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        IVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------
        IATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPV                        LM  GKVVAYASRQLKSHEQNYPTHDLELAAV       
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV---------------------QLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAV-------

Query:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
                  IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPG+ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT
Subjt:  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLT

Query:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
        VQPTLR RIIDAQ NDPYLVEKRGLAEAG+  EFS+SSDG LLFERRLCVPSDSAVKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS
Subjt:  VQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS

Query:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR
        +CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIV LHGVPVSIVSDRDAR
Subjt:  RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGVPVSIVSDRDAR

Query:  FTSKF
        FTSKF
Subjt:  FTSKF

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.7e-89

31.71

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        +R+ +D+  LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        + ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--
        +  PL  L +K   + W+     + +N+KQ LV+ PV  +               + +G V            V Y S ++   + NY   D E+ A+  
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--

Query:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA
                         I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I      
Subjt:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR
            + Q+++    +++++    ND  L+    L    K VE +I   DG L+  + ++ +P+D+ +   ++ K H     +HPG   +   + R + W+
Subjt:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR

Query:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV
         +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G 
Subjt:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV

Query:  PVSIVSDRDARFTSK
        P  I++D D  FTS+
Subjt:  PVSIVSDRDARFTSK

P0CT35 Transposon Tf2-2 polyprotein

1.7e-89

31.71

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        +R+ +D+  LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        + ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--
        +  PL  L +K   + W+     + +N+KQ LV+ PV  +               + +G V            V Y S ++   + NY   D E+ A+  
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--

Query:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA
                         I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I      
Subjt:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR
            + Q+++    +++++    ND  L+    L    K VE +I   DG L+  + ++ +P+D+ +   ++ K H     +HPG   +   + R + W+
Subjt:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR

Query:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV
         +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G 
Subjt:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV

Query:  PVSIVSDRDARFTSK
        P  I++D D  FTS+
Subjt:  PVSIVSDRDARFTSK

P0CT36 Transposon Tf2-3 polyprotein

1.7e-89

31.71

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        +R+ +D+  LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        + ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--
        +  PL  L +K   + W+     + +N+KQ LV+ PV  +               + +G V            V Y S ++   + NY   D E+ A+  
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--

Query:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA
                         I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I      
Subjt:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR
            + Q+++    +++++    ND  L+    L    K VE +I   DG L+  + ++ +P+D+ +   ++ K H     +HPG   +   + R + W+
Subjt:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR

Query:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV
         +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G 
Subjt:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV

Query:  PVSIVSDRDARFTSK
        P  I++D D  FTS+
Subjt:  PVSIVSDRDARFTSK

P0CT37 Transposon Tf2-4 polyprotein

1.7e-89

31.71

Show/hide

Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        +R+ +D+  LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        + ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--
        +  PL  L +K   + W+     + +N+KQ LV+ PV  +               + +G V            V Y S ++   + NY   D E+ A+  
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--

Query:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA
                         I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I      
Subjt:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR
            + Q+++    +++++    ND  L+    L    K VE +I   DG L+  + ++ +P+D+ +   ++ K H     +HPG   +   + R + W+
Subjt:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR

Query:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV
         +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G 
Subjt:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV

Query:  PVSIVSDRDARFTSK
        P  I++D D  FTS+
Subjt:  PVSIVSDRDARFTSK

P0CT41 Transposon Tf2-12 polyprotein

1.7e-89

31.71

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Query:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV
        +R+ +D+  LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V
Subjt:  MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFV

Query:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR
        + ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S+
Subjt:  IVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR

Query:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--
        +  PL  L +K   + W+     + +N+KQ LV+ PV  +               + +G V            V Y S ++   + NY   D E+ A+  
Subjt:  IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVQLYL--------------MVLGKV------------VAYASRQLKSHEQNYPTHDLELAAV--

Query:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA
                         I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I      
Subjt:  -----------------IFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR
            + Q+++    +++++    ND  L+    L    K VE +I   DG L+  + ++ +P+D+ +   ++ K H     +HPG   +   + R + W+
Subjt:  VTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSIS-SDGELLFER-RLCVPSDSAVKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWR

Query:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV
         +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G 
Subjt:  NMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHGV

Query:  PVSIVSDRDARFTSK
        P  I++D D  FTS+
Subjt:  PVSIVSDRDARFTSK

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

8.8e-25

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Query:  HLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW
        HL +VLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW  P   +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W
Subjt:  HLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKLVTAPV
        ++    +F+ LK  + T PV
Subjt:  SKACEDSFQNLKQKLVTAPV

Sequences

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CDS sequence

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ATGCGTCTATGCATTGACTTCTCTGAGTTGAATAAGGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACGGTGTT
CTCTAAGATTGATCTTCAGTCGGGATACCATCAGTTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTACGAGTTTATTGTGATGT
CTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGATGATATCTTGATATAC
TCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGT
GTCCTTTCTAGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCT
TTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCA
TGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCAACTGTACCTGATGGTTCTGGGTAAGGTGGTCGCTTATGCTTCTCGTCAGTTGAAGAG
TCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGC
GAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCGAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCA
CTTATTACCCGACAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTT
GAGGCATAGGATCATTGATGCTCAGGGTAACGATCCTTATTTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGAAAGCGGTTGAGTTCTCCATATCCTCTGATGGTGAAC
TTTTGTTTGAGAGACGCCTCTGTGTGCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTAAGGCTCACAGTTCCCCGTTTTCCATGCACCCAGGTAGTACGAAGATG
TATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACC
AGCCGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGG
TTGTGGTGGACAGACTTACCAAATCAGCACACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGATATTACATGGA
GTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTAG

mRNA sequence

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Protein sequence

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MRLCIDFSELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIY
SKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKA
CEDSFQNLKQKLVTAPVQLYLMVLGKVVAYASRQLKSHEQNYPTHDLELAAVIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGEANVVADALSRKVSHSAA
LITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRHRIIDAQGNDPYLVEKRGLAEAGKAVEFSISSDGELLFERRLCVPSDSAVKTELLSKAHSSPFSMHPGSTKM
YQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVILHG
VPVSIVSDRDARFTSKF

Cmc08g0227601 (gene) of Melon (Charmono) v1.1 genome