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Cmc08g0228461 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0228461
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr08:22710037..22710366
RNA-Seq ExpressionCmc08g0228461
SyntenyCmc08g0228461
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034928.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.5e-52100Show/hide
Query:  KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA
        KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA
Subjt:  KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA

Query:  GDTND
        GDTND
Subjt:  GDTND

KAA0047979.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-4788.99Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FMESPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        SDWAGDTND
Subjt:  SDWAGDTND

TYK05470.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.1e-5398.17Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTL  ELFYFSSKEFKLEGYCE
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        SDWAGDTND
Subjt:  SDWAGDTND

TYK06895.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-4788.99Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FMESPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        SDWAGDTND
Subjt:  SDWAGDTND

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-4788.99Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FMESPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        SDWAGDTND
Subjt:  SDWAGDTND

TrEMBL top hitse value%identityAlignment
A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-4788.99Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FMESPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        SDWAGDTND
Subjt:  SDWAGDTND

A0A5A7SWD9 Retrovirus-related pol polyprotein from transposon tnt 1-947.4e-53100Show/hide
Query:  KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA
        KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA
Subjt:  KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA

Query:  GDTND
        GDTND
Subjt:  GDTND

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-4788.99Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FMESPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        SDWAGDTND
Subjt:  SDWAGDTND

A0A5D3C291 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-5398.17Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTL  ELFYFSSKEFKLEGYCE
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        SDWAGDTND
Subjt:  SDWAGDTND

A0A5D3D497 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-4788.99Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FMESPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        SDWAGDTND
Subjt:  SDWAGDTND

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-1340.52Show/hide
Query:  MINSKPVTTSIETGTKLFKH------EEGDDVDPSYFKSLVGSLRY-LTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEF
        M N+KPV+T +    KL K       EE  ++    + S VGSL Y + CTR DI  +VG+VS+F+E+P   H +  K ILRYL+GT G +   F   + 
Subjt:  MINSKPVTTSIETGTKLFKH------EEGDDVDPSYFKSLVGSLRY-LTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEF

Query:  KLEGYCESDWAGDTND
         L+GY ++D AGD ++
Subjt:  KLEGYCESDWAGDTND

P92519 Uncharacterized mitochondrial protein AtMg008101.5e-1537.5Show/hide
Query:  MINSKPVTT----SIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLE
        M++ KP++T     + +     K+      DPS F+S+VG+L+YLT TR DI ++V +V Q M  PT     + KR+LRY+KGT+   L+   + +  ++
Subjt:  MINSKPVTT----SIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLE

Query:  GYCESDWAGDTN
         +C+SDWAG T+
Subjt:  GYCESDWAGDTN

P93290 Uncharacterized mitochondrial protein AtMg002402.8e-0940Show/hide
Query:  YLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA
        YLT TR D+ F+V  +SQF  +  T  ++   ++L Y+KGT+G  LFY ++ + +L+ + +SDWA
Subjt:  YLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.7e-1944.04Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        MI +KPVTT +    KL  +      DP+ ++ +VGSL+YL  TR DI ++V  +SQFM  PT  HL+  KRILRYL GT    +F        L  Y +
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        +DWAGD +D
Subjt:  SDWAGDTND

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.5e-1841.28Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        M+ +KPV T + T  KL  H      DP+ ++ +VGSL+YL  TR D+ ++V  +SQ+M  PT  H    KR+LRYL GT    +F        L  Y +
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDWAGDTND
        +DWAGDT+D
Subjt:  SDWAGDTND

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.3e-1636.89Show/hide
Query:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE
        ++  KP +  ++       H  GD VD   ++ L+G L YL  TRLDI F+V  +SQF E+P   H +   +IL Y+KGT+G  LFY S  E +L+ + +
Subjt:  MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCE

Query:  SDW
        + +
Subjt:  SDW

ATMG00240.1 Gag-Pol-related retrotransposon family protein2.0e-1040Show/hide
Query:  YLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA
        YLT TR D+ F+V  +SQF  +  T  ++   ++L Y+KGT+G  LFY ++ + +L+ + +SDWA
Subjt:  YLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWA

ATMG00810.1 DNA/RNA polymerases superfamily protein1.1e-1637.5Show/hide
Query:  MINSKPVTT----SIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLE
        M++ KP++T     + +     K+      DPS F+S+VG+L+YLT TR DI ++V +V Q M  PT     + KR+LRY+KGT+   L+   + +  ++
Subjt:  MINSKPVTT----SIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLE

Query:  GYCESDWAGDTN
         +C+SDWAG T+
Subjt:  GYCESDWAGDTN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAATTCTAAGCCTGTCACAACTTCGATTGAAACTGGGACCAAATTGTTCAAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAG
TTTGAGATACTTGACTTGCACACGACTAGATATTCTTTTCAGTGTTGGATTGGTGAGTCAATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTC
TTCGTTACCTGAAAGGTACGCTTGGCTCTGAGTTGTTTTATTTTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGAGAGTGACTGGGCTGGAGATACTAATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCAATTCTAAGCCTGTCACAACTTCGATTGAAACTGGGACCAAATTGTTCAAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAG
TTTGAGATACTTGACTTGCACACGACTAGATATTCTTTTCAGTGTTGGATTGGTGAGTCAATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTC
TTCGTTACCTGAAAGGTACGCTTGGCTCTGAGTTGTTTTATTTTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGAGAGTGACTGGGCTGGAGATACTAATGATTGA
Protein sequenceShow/hide protein sequence
MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND