; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0228471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0228471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionProtein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1
Genome locationCMiso1.1chr08:22712429..22713004
RNA-Seq ExpressionCmc08g0228471
SyntenyCmc08g0228471
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR021099 - Plant organelle RNA recognition domain
IPR045040 - PORR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034927.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]8.4e-9998.9Show/hide
Query:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
        MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
Subjt:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT

Query:  YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY
        YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI  Y
Subjt:  YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY

KAA0056510.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]1.0e-9190.27Show/hide
Query:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY
        YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDYFKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT 
Subjt:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY

Query:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
        K MHITFPMKYSNGFEMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
Subjt:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR

TYK05469.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]7.2e-9897.79Show/hide
Query:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
        MYQTSTCRQLAADRLVKLLMLSRVNKVTV+VVDQLKWDLGLPKDYVQSIVP+FPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
Subjt:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT

Query:  YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY
        YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI  Y
Subjt:  YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY

TYK12080.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]1.0e-9190.27Show/hide
Query:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY
        YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDYFKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT 
Subjt:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY

Query:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
        K MHITFPMKYSNGFEMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
Subjt:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR

XP_031741647.1 protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucumis sativus]1.3e-9190.27Show/hide
Query:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY
        YQTSTCRQ AADRLVKLLMLSRV+KV VS++DQLKWDLGLPKDYV+SIVPDFPDYFKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  
Subjt:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY

Query:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
        KGM+ITFPMKYSNGFEMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
Subjt:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR

TrEMBL top hitse value%identityAlignment
A0A0A0KRP2 PORR domain-containing protein6.3e-9290.27Show/hide
Query:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY
        YQTSTCRQ AADRLVKLLMLSRV+KV VS++DQLKWDLGLPKDYV+SIVPDFPDYFKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  
Subjt:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY

Query:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
        KGM+ITFPMKYSNGFEMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
Subjt:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR

A0A5A7T026 Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X14.1e-9998.9Show/hide
Query:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
        MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
Subjt:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT

Query:  YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY
        YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI  Y
Subjt:  YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY

A0A5A7UN72 Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X14.8e-9290.27Show/hide
Query:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY
        YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDYFKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT 
Subjt:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY

Query:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
        K MHITFPMKYSNGFEMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
Subjt:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR

A0A5D3C507 Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X13.5e-9897.79Show/hide
Query:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
        MYQTSTCRQLAADRLVKLLMLSRVNKVTV+VVDQLKWDLGLPKDYVQSIVP+FPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
Subjt:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT

Query:  YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY
        YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI  Y
Subjt:  YKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY

A0A5D3CKY8 Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X14.8e-9290.27Show/hide
Query:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY
        YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDYFKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT 
Subjt:  YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY

Query:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
        K MHITFPMKYSNGFEMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
Subjt:  KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR

SwissProt top hitse value%identityAlignment
A0MFS5 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic2.8e-1228.25Show/hide
Query:  RLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHITFPMK
        +L KL+M+S   ++ +  +  LK DLGLP ++  +I   +P YF+VV      +       LEL  W+ EL  S  E  +   + +    + + I  P K
Subjt:  RLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHITFPMK

Query:  YS-----NGFEMDKFK-KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYF
        ++      G  + K + + + +++ + YISPY++ SHL     E EK    ++HELL +   K+T  +++    E F
Subjt:  YS-----NGFEMDKFK-KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYF

B6TTV8 Protein WHAT'S THIS FACTOR 1, chloroplastic4.2e-1629.83Show/hide
Query:  LAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHIT
        LA  +L KLLM+S+  ++ +  V  LK DLGLP ++  ++   +P YF+VV        +     LEL  W+ EL  S  E  +  ++ +    + + I 
Subjt:  LAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHIT

Query:  FPMKYS-----NGFEMDKFK-KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYF
         P+K++      G ++ + + + +  ++++PYISPY + SHL   +DE EK    ++HE+L + V K+T  +++    E F
Subjt:  FPMKYS-----NGFEMDKFK-KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYF

Q65XL5 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic1.6e-1530.39Show/hide
Query:  LAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHIT
        LA  +L KLLM+S+  ++ +  +  LK DLGLP ++  +I   +P YF+VV       G G    LEL  W+ EL  S  E  +   + + +  + + I 
Subjt:  LAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHIT

Query:  FPMKYS-----NGFEMDKFK-KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYF
         P+K++      G ++ + + + V +++++PYISPY + SHL   + E EK    ++HE+L + + K+T  +++    E F
Subjt:  FPMKYS-----NGFEMDKFK-KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYF

Q689D6 Protein ROOT PRIMORDIUM DEFECTIVE 11.6e-1228.9Show/hide
Query:  AADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAA---KVKFDTYKGMHIT
        A  RL KL+M+S   ++ +  V   + + GLP+D+  S++   P +F+++  +         + +E+V  +  L+   +E++     + K    + +  +
Subjt:  AADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAA---KVKFDTYKGMHIT

Query:  FPMKYSNGFEMDK-FKKWVDEWQKLPYISPYENASHLSPNNDES----EKWTVAILHELLHMLVTKKTEKENI
        F + +  GF++ K F+  V +WQ+LPY SPYE+ S     + E+    EK +VA +HELL + V KK   E I
Subjt:  FPMKYSNGFEMDK-FKKWVDEWQKLPYISPYENASHLSPNNDES----EKWTVAILHELLHMLVTKKTEKENI

Q9ZUZ6 Protein WHAT'S THIS FACTOR 9, mitochondrial6.0e-2336.56Show/hide
Query:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWN-NELTTSVVEKMAAKVKFD
        +YQTS       DRL KL+++S+ N + +S+V  +KW LGLP DY+Q    +    F+ V  ++   GL        V +N  +   SV++K A K +  
Subjt:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWN-NELTTSVVEKMAAKVKFD

Query:  TYKGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGL
              I FP+  S G  +  K + W+ E+QKLPY+SPY++ S L P++D +EK  V  LHELL + V    E++ +LC+ ++FGL
Subjt:  TYKGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGL

Arabidopsis top hitse value%identityAlignment
AT1G71850.1 Ubiquitin carboxyl-terminal hydrolase family protein1.1e-5655.61Show/hide
Query:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT
        +Y + T +Q  ADRL+KLLM++R+NK+ + ++D LKWDLGLPKDYV+++VP+FPDYF+V+     +   G +  LELVCW+NE   SV+EK A  ++   
Subjt:  MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDT

Query:  Y-KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR
        Y KG  I FPMK+SNGF +D K KKW+D+WQKLPYISPYENA HLS  +DES+KW  A+LHE++++ V+KK EK+ IL +GE+ GLR
Subjt:  Y-KGMHITFPMKYSNGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLR

AT3G58520.1 Ubiquitin carboxyl-terminal hydrolase family protein2.5e-2436.47Show/hide
Query:  DRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEK-------MAAKVKFDTYK--G
        +RL ++LM+ R   V++  +  LK+DLGLP +Y +++V  +PD+F  V   N          L+LV W +E   S ++K          + ++  +K   
Subjt:  DRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEK-------MAAKVKFDTYK--G

Query:  MHITFPMKYSNGF-EMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK
          +TFPM +  G+    K K W+DE+QKLPYISPY++ S++ P +D  EK  VA+LHELL + + KKT++
Subjt:  MHITFPMKYSNGF-EMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK

AT3G58520.2 Ubiquitin carboxyl-terminal hydrolase family protein2.5e-2436.47Show/hide
Query:  DRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEK-------MAAKVKFDTYK--G
        +RL ++LM+ R   V++  +  LK+DLGLP +Y +++V  +PD+F  V   N          L+LV W +E   S ++K          + ++  +K   
Subjt:  DRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEK-------MAAKVKFDTYK--G

Query:  MHITFPMKYSNGF-EMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK
          +TFPM +  G+    K K W+DE+QKLPYISPY++ S++ P +D  EK  VA+LHELL + + KKT++
Subjt:  MHITFPMKYSNGF-EMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK

AT4G24320.1 Ubiquitin carboxyl-terminal hydrolase family protein1.6e-3943.26Show/hide
Query:  RQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFD-TYKGMHI
        R +   RL K LML+    + + V+D+ ++DLGLP+DY+ S++ D+P+YF+V   ++  +G   T  L +    N L  S +E+  A +      KG+ I
Subjt:  RQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFD-TYKGMHI

Query:  TFPMKYSNGFEMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFG
         + M +  G+E+ K  K WV++WQ LPYISPYENA HL   +D++EKW VA+LHELL +LV+KKTE +N++C+GEY G
Subjt:  TFPMKYSNGFEMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFG

AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein2.0e-2938.95Show/hide
Query:  RLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYS
        RL KLLML+    +++  +D L+WDLGLP DY  S++   PD F +V   +   G      L+L+ W+  L  S ++     ++ D      + FP+K++
Subjt:  RLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYS

Query:  NGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGL
         GF +  K  +W+ EWQ+LPY SPY +ASHL P  D SEK  V + HELLH+ + KKTE++N+  + + F L
Subjt:  NGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAATAAAGTAACTGTAAGTGTCGTTGATCAATTGAAATG
GGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGG
TATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATG
AAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAA
TGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGTGAGTATTTTGGTT
TAAGAGAGCATTGCTTCACCATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAATAAAGTAACTGTAAGTGTCGTTGATCAATTGAAATG
GGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGG
TATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATG
AAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAA
TGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGTGAGTATTTTGGTT
TAAGAGAGCATTGCTTCACCATCTAG
Protein sequenceShow/hide protein sequence
MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPM
KYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLREHCFTI