; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0229311 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0229311
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr08:24229001..24229468
RNA-Seq ExpressionCmc08g0229311
SyntenyCmc08g0229311
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-7387.82Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MY MLCTRPDICY VGIVSRYQSNPGLDHW AVKI+LKYLRR RDYMLVYGAKDLILTGYTDSDFQTDKD RKS SGSVFTLNGGA+VWRSIKQG IADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
        T+E EYVAACEA KE VWL+KFLHDLEVVPNMNLPITLYCDN+  VAN KEPR HK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-7287.82Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MY MLCTRPDICY VGIVSRYQSNPGLDHW AVKIILKYLRR RDYMLVYGAKDLILTGYT+SDFQTDKD RKS S SVFTLNGGA+VWRSIKQG IADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
        T+E EYVAACEA KE VWLKKFLHDLEVVPNMNLPITLYCDN+  VAN KEPR HK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
KAA0041818.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-84100Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVVANFKEPRRHK
        TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVVANFKEPRRHK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVVANFKEPRRHK
KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-7389.1Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MYVMLCTRPDICY VGIVSRYQSNPGLDHW AVKIILKYLRR RDYMLVYGAKDLILTGYTDSDFQTDKD RKS SGSVFTLNGGA+VWRSIKQG IADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
        T+E EYVAACEA KE VWL+KFLHDLEVVPNMNLPITLYCDN+  VAN KEPR HK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-7387.82Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MY MLCTRPDICY VGIVSRYQSNPGLDHW AVKI+LKYLRR RDYMLVYGAKDLILTGYTDSDFQTDKD RKS SGSVFTLNGGA+VWRSIKQG IADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
        T+E EYVAACEA KE VWL+KFLHDLEVVPNMNLPITLYCDN+  VAN KEPR HK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein2.6e-7287.82Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MY MLCTRPDICY VGIVSRYQSNPGLDHW AVKIILKYLRR RDYMLVYGAKDLILTGYT+SDFQTDKD RKS S SVFTLNGGA+VWRSIKQG IADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
        T+E EYVAACEA KE VWLKKFLHDLEVVPNMNLPITLYCDN+  VAN KEPR HK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
A0A5A7TKM4 Gag/pol protein6.3e-7489.1Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MYVMLCTRPDICY VGIVSRYQSNPGLDHW AVKIILKYLRR RDYMLVYGAKDLILTGYTDSDFQTDKD RKS SGSVFTLNGGA+VWRSIKQG IADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
        T+E EYVAACEA KE VWL+KFLHDLEVVPNMNLPITLYCDN+  VAN KEPR HK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
A0A5A7TZD0 Gag/pol protein2.4e-7387.82Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MY MLCTRPDICY VGIVSRYQSNPGLDHW AVKI+LKYLRR RDYMLVYGAKDLILTGYTDSDFQTDKD RKS SGSVFTLNGGA+VWRSIKQG IADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
        T+E EYVAACEA KE VWL+KFLHDLEVVPNMNLPITLYCDN+  VAN KEPR HK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
A0A5A7UYE8 Gag/pol protein2.4e-7387.82Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MY MLCTRPDICY VGIVSRYQSNPGLDHW AVKI+LKYLRR RDYMLVYGAKDLILTGYTDSDFQTDKD RKS SGSVFTLNGGA+VWRSIKQG IADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
        T+E EYVAACEA KE VWL+KFLHDLEVVPNMNLPITLYCDN+  VAN KEPR HK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNN-VVANFKEPRRHK
A0A5D3C1V1 Gag/pol protein7.9e-85100Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVVANFKEPRRHK
        TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVVANFKEPRRHK
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVVANFKEPRRHK
SwissProt top hitse value%identityAlignment
P04146 Copia protein2.5e-1935.62Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYG---AKDLILTGYTDSDFQTDKDFRKSMSGSVFTL-NGGAIVWRSIKQGY
        MY+MLCTRPD+   V I+SRY S    + W  +K +L+YL+   D  L++    A +  + GY DSD+   +  RKS +G +F + +   I W + +Q  
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYG---AKDLILTGYTDSDFQTDKDFRKSMSGSVFTL-NGGAIVWRSIKQGY

Query:  IADSTIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDN-NVVANFKEPRRHK
        +A S+ E EY+A  EA +E +WLK  L  + +   +  PI +Y DN   ++    P  HK
Subjt:  IADSTIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDN-NVVANFKEPRRHK
P0CV72 Secreted RxLR effector protein 1616.4e-2345.83Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVY-GAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIAD
        MY+M+ TRPD+   VG++S++ S+P   HW A+K +L+YL+  + Y L +  A    L GY+D+D+  D + R+S SG +F LNGG + WRS KQ  +A 
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVY-GAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIAD

Query:  STIEVEYVAACEATKEVVWL
        S+ E EY+A  EAT+E VWL
Subjt:  STIEVEYVAACEATKEVVWL
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-3350.7Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS
        MY M+CTRPDI + VG+VSR+  NPG +HW AVK IL+YLR      L +G  D IL GYTD+D   D D RKS +G +FT +GGAI W+S  Q  +A S
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADS

Query:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDN
        T E EY+AA E  KE++WLK+FL +L +         +YCD+
Subjt:  TIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDN
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.7e-1332.85Show/hide
Query:  TRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDY-MLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADSTIEVE
        TRPDI Y V  +S++   P  +H  A+K IL+YL    ++ + +     L L  Y+D+D+  DKD   S +G +  L    I W S KQ  +  S+ E E
Subjt:  TRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDY-MLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADSTIEVE

Query:  YVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDN
        Y +    + E+ W+   L +L +   +  P  +YCDN
Subjt:  YVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDN
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.4e-1533.58Show/hide
Query:  TRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDY-MLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADSTIEVE
        TRPD+ Y V  +S+Y   P  DHW A+K +L+YL    D+ + +     L L  Y+D+D+  D D   S +G +  L    I W S KQ  +  S+ E E
Subjt:  TRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDY-MLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADSTIEVE

Query:  YVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDN
        Y +    + E+ W+   L +L +   ++ P  +YCDN
Subjt:  YVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDN
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 87.0e-1733.54Show/hide
Query:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAK-DLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIAD
        MY+ + TR DI + V  +S++   P L H  AV  IL Y++      L Y ++ ++ L  ++D+ FQ+ KD R+S +G    L    I W+S KQ  ++ 
Subjt:  MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAK-DLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIAD

Query:  STIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVV------ANFKEPRRH
        S+ E EY A   AT E++WL +F  +L++   ++ P  L+CDN         A F E  +H
Subjt:  STIEVEYVAACEATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVV------ANFKEPRRH
ATMG00810.1 DNA/RNA polymerases superfamily protein6.6e-0728.32Show/hide
Query:  TRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLR-RMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADSTIEVE
        TRPDI Y V IV +    P L  +  +K +L+Y++  +   + ++    L +  + DSD+      R+S +G    L    I W + +Q  ++ S+ E E
Subjt:  TRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLR-RMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADSTIEVE

Query:  YVAACEATKEVVW
        Y A      E+ W
Subjt:  YVAACEATKEVVW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGTTATGCTCTGCACTAGACCAGACATTTGTTATGTAGTAGGAATAGTTAGTAGGTATCAGTCCAACCCAGGGTTAGACCACTGGATGGCGGTTAAAATTATTCT
TAAGTATCTTAGGAGAATGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTTCAAACCGATAAAGATTTTAGGAAAT
CCATGTCAGGATCAGTGTTCACCCTGAATGGGGGAGCTATAGTATGGCGTAGCATCAAACAAGGATACATTGCAGACTCTACTATAGAGGTTGAATATGTCGCTGCTTGT
GAAGCAACAAAAGAAGTAGTTTGGCTCAAGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGCCCATCACTCTATATTGTGATAATAATGTAGTAGCCAA
TTTTAAAGAACCTCGTAGGCATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGTTATGCTCTGCACTAGACCAGACATTTGTTATGTAGTAGGAATAGTTAGTAGGTATCAGTCCAACCCAGGGTTAGACCACTGGATGGCGGTTAAAATTATTCT
TAAGTATCTTAGGAGAATGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTTCAAACCGATAAAGATTTTAGGAAAT
CCATGTCAGGATCAGTGTTCACCCTGAATGGGGGAGCTATAGTATGGCGTAGCATCAAACAAGGATACATTGCAGACTCTACTATAGAGGTTGAATATGTCGCTGCTTGT
GAAGCAACAAAAGAAGTAGTTTGGCTCAAGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGCCCATCACTCTATATTGTGATAATAATGTAGTAGCCAA
TTTTAAAGAACCTCGTAGGCATAAATGA
Protein sequenceShow/hide protein sequence
MYVMLCTRPDICYVVGIVSRYQSNPGLDHWMAVKIILKYLRRMRDYMLVYGAKDLILTGYTDSDFQTDKDFRKSMSGSVFTLNGGAIVWRSIKQGYIADSTIEVEYVAAC
EATKEVVWLKKFLHDLEVVPNMNLPITLYCDNNVVANFKEPRRHK