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Cmc08g0229341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0229341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr08:24260611..24261090
RNA-Seq ExpressionCmc08g0229341
SyntenyCmc08g0229341
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN66208.1 hypothetical protein VITISV_035070 [Vitis vinifera]7.8e-6678.62Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+H  + + +HQSTY +K+LK FYMDKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSS+PT+RHWNG+KH+LRYLRGT DMSLFYS +S   L+GYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

KAF7137709.1 hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]1.3e-6577.36Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+HL + I +HQS YTEK+LK FYMDKAHPL+ PMVVRSLDV KD FRP E+ E++LGPEVPY+SAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSS+PT+RHW G+KH+ RYLRGTID+ LFYSN S   L+GYADAGYLSDPHKARS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

RVW42583.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]7.8e-6678.62Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+H  + + +HQSTY +K+LK FYMDKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSS+PT+RHWNG+KH+LRYLRGT DMSLFYS +S   L+GYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

RVW51051.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.0e-6578.62Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+H  + + +HQSTY +K+LK FYMDKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSSSPT+RHWNG+KH+LRYLRGT DM LFYS +S   L+GYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

RVW93168.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.0e-6578.62Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+H  + + +HQSTY +K+LK FYMDKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSSSPT+RHWNG+KH+LRYLRGT DM LFYS +S   L+GYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

TrEMBL top hitse value%identityAlignment
A0A2N9FE48 Reverse transcriptase Ty1/copia-type domain-containing protein1.8e-6883.65Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+HL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSS+PT RHWNGVKHVLRYLRGT DM LFY NKSN  LVGYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

A0A2N9G6F8 Reverse transcriptase Ty1/copia-type domain-containing protein2.4e-6883.02Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+HL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSS+PT RHWNGVKHVLRYLRGT DM LFY NKSN  L+GYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

A0A2N9G9W6 Reverse transcriptase Ty1/copia-type domain-containing protein2.4e-6883.65Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+HL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSS+PT RHWNGVKHVLRYLRGT DM LFY NKSN  LVGYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

A0A2N9I5S5 Reverse transcriptase Ty1/copia-type domain-containing protein2.4e-6883.02Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+HL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSS+PT RHWNGVKHVLRYLRGT DM LFY NKSN  L+GYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

A0A2N9IT14 Uncharacterized protein1.8e-6883.65Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN
        MKDLGKTKF  GLQI+HL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEVPYLSAIGALMYLAN TR DIAFSVN
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVN

Query:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        LLARYSS+PT RHWNGVKHVLRYLRGT DM LFY NKSN  LVGYADAGYLSDPHK RS
Subjt:  LLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.3e-2035.9Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPE----VPYLSAIGALMYLANNTRSDIA
        M DL + K + G++I+   D+I++ QS Y +KIL  F M+  + ++ P+             P + N ELL  +     P  S IG LMY+   TR D+ 
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPE----VPYLSAIGALMYLANNTRSDIA

Query:  FSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFD--LVGYADAGY
         +VN+L+RYSS      W  +K VLRYL+GTIDM L +     F+  ++GY D+ +
Subjt:  FSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFD--LVGYADAGY

P0CV72 Secreted RxLR effector protein 1613.3e-1444.71Show/hide
Query:  VPYLSAIGALMYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        VPYLSA+GA+MYL   TR D+A +V +L++++S P   HW  +K VLRYL+ T    L ++      LVGY+DA +  D    RS
Subjt:  VPYLSAIGALMYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-1836.02Show/hide
Query:  MKDLGKTKFYRGLQI--KHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFS
        MKDLG  +   G++I  +    ++++ Q  Y E++L+ F M  A P++ P+       KK    P    E+    +VPY SA+G+LMY    TR DIA +
Subjt:  MKDLGKTKFYRGLQI--KHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFS

Query:  VNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        V +++R+  +P K HW  VK +LRYLRGT    L +   S+  L GY DA    D    +S
Subjt:  VNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

P92519 Uncharacterized mitochondrial protein AtMg008108.0e-1329.45Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVP----YLSAIGALMYLANNTRSDIA
        MKDLG   ++ G+QIK     +F+ Q+ Y E+IL +  M    P++ P+             P + N  +   + P    + S +GAL YL   TR DI+
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVP----YLSAIGALMYLANNTRSDIA

Query:  FSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        ++VN++ +    PT   ++ +K VLRY++GTI   L+    S  ++  + D+ +       RS
Subjt:  FSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.0e-1331.03Show/hide
Query:  FYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVNLLARYSSS
        ++ G++ K +   + + Q  YT  +L    M  A P+  PM            +    +   L     Y   +G+L YLA  TR D++++VN L++Y   
Subjt:  FYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVNLLARYSSS

Query:  PTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSD
        PT  HWN +K VLRYL GT D  +F    +   L  Y+DA +  D
Subjt:  PTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.3e-1331.48Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPM---VVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAF
        ++DLG  K++ GL+I      I I Q  Y   +L    +    P ++PM   V  S     D    +            Y   IG LMYL   TR DI+F
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPM---VVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAF

Query:  SVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        +VN L+++S +P   H   V  +L Y++GT+   LFYS+++   L  ++DA + S     RS
Subjt:  SVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.6e-0840Show/hide
Query:  MYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        MYL   TR D+ F+VN L+++SS+        V  VL Y++GT+   LFYS  S+  L  +AD+ + S P   RS
Subjt:  MYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS

ATMG00810.1 DNA/RNA polymerases superfamily protein5.7e-1429.45Show/hide
Query:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVP----YLSAIGALMYLANNTRSDIA
        MKDLG   ++ G+QIK     +F+ Q+ Y E+IL +  M    P++ P+             P + N  +   + P    + S +GAL YL   TR DI+
Subjt:  MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVP----YLSAIGALMYLANNTRSDIA

Query:  FSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS
        ++VN++ +    PT   ++ +K VLRY++GTI   L+    S  ++  + D+ +       RS
Subjt:  FSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGATCTTGGTAAGACAAAATTTTACCGTGGCTTACAAATCAAGCATTTAGTCGATCGAATTTTTATTCATCAATCAACATATACAGAAAAGATTTTAAAAAGTTT
CTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTG
AAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGATCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACA
AAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCAGA
TGCTGGATATTTATCTGATCCACACAAAGCAAGATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGATCTTGGTAAGACAAAATTTTACCGTGGCTTACAAATCAAGCATTTAGTCGATCGAATTTTTATTCATCAATCAACATATACAGAAAAGATTTTAAAAAGTTT
CTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTG
AAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGATCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACA
AAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCAGA
TGCTGGATATTTATCTGATCCACACAAAGCAAGATCTTAA
Protein sequenceShow/hide protein sequence
MKDLGKTKFYRGLQIKHLVDRIFIHQSTYTEKILKSFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVNLLARYSSSPT
KRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPHKARS