CuGenDBv2

Gene ID	Cmc08g0229401
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr08:24307266..24307769
RNA-Seq Expression	Cmc08g0229401
Synteny	Cmc08g0229401
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041809.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-89

100

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

KAA0043126.1 gag/pol protein [Cucumis melo var. makuwa]

9.7e-75

83.83

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYGTKDLILTGYTD DFQ DKDARKST  S+F LNEG +VWRS+KQ+CIADSTMEA+Y+AACEA  +AVWLRKFLTDLEIVPNMHLPITLYCDNSG V
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        AN REP SHKRGKH E KYHLIR+IVHRGDVVVTQISS +NI DPFTK LTAKVFE HLQNLGL+CL
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

KAA0059674.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

7.4e-75

82.63

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYG+KDLILTGYTDSDFQ DKD+RKST  SVF LN G VVWR++KQ+CIADSTMEAE++ ACEAA EAVWL+KFLTDLE+VPNMHLPITLYCDNSG V
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        ANSREPRSHKRGKHIERKYHLIR+I+HRGDV+VT+ISS +NIADPFTKALTAKVFE HL  LGL+ L
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

KAA0067959.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-75

86.23

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYGTK LILTGYTDSDFQMDKDARKST  SVF LN G VVWRS+KQ+CI D+TMEAE+VAA EAA E VWLRKFLTDLE VPNMHLPIT YCDNSG V
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        ANSREPR+HKRGKHIERKYHLIRKIVHRGDVVVTQISS +NIADPFTKALTAKVFE HLQ+LGL+CL
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

TYK21785.1 gag/pol protein [Cucumis melo var. makuwa]

2.6e-75

85.63

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYGTK LILTGYTDSDFQMDKDARKST  S+F LN G VVWRS+KQ+CI D+TMEAE+VAA EAA E VWLRKFLTDLE VPNMHLPIT YCDNSG V
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        ANSREPR+HKRGKHIERKYHLIRKIVHRGDVVVTQISS +NIADPFTKALTAKVFE HLQ+LGL+CL
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKA4 Gag/pol protein

5.2e-90

100

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

A0A5A7TM73 Gag/pol protein

4.7e-75

83.83

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYGTKDLILTGYTD DFQ DKDARKST  S+F LNEG +VWRS+KQ+CIADSTMEA+Y+AACEA  +AVWLRKFLTDLEIVPNMHLPITLYCDNSG V
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        AN REP SHKRGKH E KYHLIR+IVHRGDVVVTQISS +NI DPFTK LTAKVFE HLQNLGL+CL
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

A0A5A7UX57 Retrovirus-related pol polyprotein from transposon tnt 1-94

3.6e-75

82.63

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYG+KDLILTGYTDSDFQ DKD+RKST  SVF LN G VVWR++KQ+CIADSTMEAE++ ACEAA EAVWL+KFLTDLE+VPNMHLPITLYCDNSG V
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        ANSREPRSHKRGKHIERKYHLIR+I+HRGDV+VT+ISS +NIADPFTKALTAKVFE HL  LGL+ L
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

A0A5A7VS17 Gag/pol protein

9.5e-76

86.23

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYGTK LILTGYTDSDFQMDKDARKST  SVF LN G VVWRS+KQ+CI D+TMEAE+VAA EAA E VWLRKFLTDLE VPNMHLPIT YCDNSG V
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        ANSREPR+HKRGKHIERKYHLIRKIVHRGDVVVTQISS +NIADPFTKALTAKVFE HLQ+LGL+CL
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

A0A5D3DE27 Gag/pol protein

1.2e-75

85.63

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Query:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV
        MLVYGTK LILTGYTDSDFQMDKDARKST  S+F LN G VVWRS+KQ+CI D+TMEAE+VAA EAA E VWLRKFLTDLE VPNMHLPIT YCDNSG V
Subjt:  MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVV

Query:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL
        ANSREPR+HKRGKHIERKYHLIRKIVHRGDVVVTQISS +NIADPFTKALTAKVFE HLQ+LGL+CL
Subjt:  ANSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.3e-21

37.42

Show/hide

Query:  LTGYTDSDFQMDKDARKSTPRSVF-ILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVVANSREPRSH
        + GY DSD+   +  RKST   +F + +  ++ W + +Q  +A S+ EAEY+A  EA  EA+WL+  LT + I   +  PI +Y DN G ++ +  P  H
Subjt:  LTGYTDSDFQMDKDARKSTPRSVF-ILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVVANSREPRSH

Query:  KRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGL
        KR KHI+ KYH  R+ V    + +  I +   +AD FTK L A  F +    LGL
Subjt:  KRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGL

P0CV72 Secreted RxLR effector protein 161

3.3e-09

50.79

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Query:  LTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWL
        L GY+D+D+  D ++R+ST   +F LN G V WRS KQ  +A S+ E EY+A  EA  EAVWL
Subjt:  LTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.3e-25

39.35

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Query:  LVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVVA
        L +G  D IL GYTD+D   D D RKS+   +F  + G + W+S  Q C+A ST EAEY+AA E   E +WL++FL +L +    ++   +YCD+   + 
Subjt:  LVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVVA

Query:  NSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFE
         S+    H R KHI+ +YH IR++V    + V +IS+ +N AD  TK +    FE
Subjt:  NSREPRSHKRGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTCGTATATGGTACTAAGGATCTGATCCTTACTGGATACACTGATTCTGATTTCCAAATGGATAAAGATGCTAGAAAGTCTACACCAAGATCAGTATTCATTTTAAA
CGAAGGAGTAGTAGTATGGAGAAGCGTAAAACAAACTTGTATAGCCGACTCCACAATGGAAGCTGAATATGTAGCAGCTTGCGAAGCAGCAATGGAAGCAGTATGGTTAA
GAAAATTCTTGACAGATCTGGAAATTGTTCCAAATATGCATCTGCCAATCACTTTATACTGTGATAATAGTGGTGTAGTTGCAAATTCACGAGAACCTAGAAGCCATAAA
CGAGGAAAGCATATCGAACGCAAGTACCATCTTATCAGGAAAATTGTACATCGTGGTGATGTTGTAGTGACCCAGATTTCATCCGGGAAAAACATTGCTGATCCTTTTAC
AAAAGCCCTCACGGCTAAAGTGTTTGAGGACCACCTACAAAATTTAGGTCTACAATGTTTGTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MLVYGTKDLILTGYTDSDFQMDKDARKSTPRSVFILNEGVVVWRSVKQTCIADSTMEAEYVAACEAAMEAVWLRKFLTDLEIVPNMHLPITLYCDNSGVVANSREPRSHK
RGKHIERKYHLIRKIVHRGDVVVTQISSGKNIADPFTKALTAKVFEDHLQNLGLQCL

Cmc08g0229401 (gene) of Melon (Charmono) v1.1 genome