| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 3.9e-74 | 80.81 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MD +FQDYLIE GIQSQL APSTPQQN VSER N+TLLD+V SMMS+AQLPDSFWGYALE I ILNNVPSKSV +TPYELWK RK SL +F WGCPAH
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
VL QNPKKLE RSKLCLFVGYPKES+GGLFY PQENKVFVSTNATFLEEDH RNHQ RSK+VL+E+ KN D
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
|
|
| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 4.0e-71 | 78.18 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MDLRFQDY+IEHGIQSQL AP TPQQN VSER N+TLLD+V SMMS+AQLP SFWGYA+E + ILNNVPSKSVS+TP+ELW+ RK SL HF WGCPAH
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEE
VL NPKKLE RS+LC FVGYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+ RSKLVL E
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEE
|
|
| KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa] | 4.0e-71 | 78.18 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MDLRFQDY+IEHGIQSQL AP TPQQN VSER N+TLLD+V SMMS+AQLP SFWGYA+E + ILNNVPSKSVS+TP+ELW+ RK SL HF WGCPAH
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEE
VL NPKKLE RS+LC FVGYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+ RSKLVL E
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEE
|
|
| TYK03644.1 gag/pol protein [Cucumis melo var. makuwa] | 6.8e-79 | 85.47 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MDLRFQDYLIEHGIQSQ APS PQQN V +R N+ LLD+V SMMSF QLPDSFW YALE TI ILNNVPSKSVS+TPYELWK RKGSL HF WGCPAH
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
V QNPKKLE RSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKN D
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
|
|
| TYK30724.1 gag/pol protein [Cucumis melo var. makuwa] | 8.9e-79 | 85.47 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MDLRFQDYLIEH IQSQL AP+TPQQN VSER N+ LLD+V SM SFAQLPDSFWGYALE TI ILNNVPSKSVS+TPYELWK RKGSL HF WGCP+H
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
VL QNP KLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVS NATFLEE HIRNHQTR+KLVLEEISKN D
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TZD0 Gag/pol protein | 1.9e-71 | 78.18 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MDLRFQDY+IEHGIQSQL AP TPQQN VSER N+TLLD+V SMMS+AQLP SFWGYA+E + ILNNVPSKSVS+TP+ELW+ RK SL HF WGCPAH
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEE
VL NPKKLE RS+LC FVGYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+ RSKLVL E
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEE
|
|
| A0A5D3BUN8 Gag/pol protein | 1.9e-71 | 78.18 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MDLRFQDY+IEHGIQSQL AP TPQQN VSER N+TLLD+V SMMS+AQLP SFWGYA+E + ILNNVPSKSVS+TP+ELW+ RK SL HF WGCPAH
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEE
VL NPKKLE RS+LC FVGYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+ RSKLVL E
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEE
|
|
| A0A5D3BX45 Gag/pol protein | 3.3e-79 | 85.47 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MDLRFQDYLIEHGIQSQ APS PQQN V +R N+ LLD+V SMMSF QLPDSFW YALE TI ILNNVPSKSVS+TPYELWK RKGSL HF WGCPAH
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
V QNPKKLE RSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKN D
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
|
|
| A0A5D3E496 Gag/pol protein | 4.3e-79 | 85.47 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MDLRFQDYLIEH IQSQL AP+TPQQN VSER N+ LLD+V SM SFAQLPDSFWGYALE TI ILNNVPSKSVS+TPYELWK RKGSL HF WGCP+H
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
VL QNP KLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVS NATFLEE HIRNHQTR+KLVLEEISKN D
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
|
|
| E2GK51 Gag/pol protein (Fragment) | 1.9e-74 | 80.81 | Show/hide |
Query: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
MD +FQDYLIE GIQSQL APSTPQQN VSER N+TLLD+V SMMS+AQLPDSFWGYALE I ILNNVPSKSV +TPYELWK RK SL +F WGCPAH
Subjt: MDLRFQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVSQTPYELWKRRKGSLGHFMTWGCPAH
Query: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
VL QNPKKLE RSKLCLFVGYPKES+GGLFY PQENKVFVSTNATFLEEDH RNHQ RSK+VL+E+ KN D
Subjt: VLAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNVRD
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.6e-17 | 31.14 | Show/hide |
Query: QDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSV---SQTPYELWKRRKGSLGHFMTWGCPAHVL
+ + ++ GI L P TPQ N VSER +T+ + +M+S A+L SFWG A+ ++N +PS+++ S+TPYE+W +K L H +G +V
Subjt: QDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSV---SQTPYELWKRRKGSLGHFMTWGCPAHVL
Query: AQNPK-KLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISK
+N + K + +S +FVGY E G +D K V+ + E + + + + + V + SK
Subjt: AQNPK-KLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISK
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.4e-23 | 35.12 | Show/hide |
Query: FQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVS-QTPYELWKRRKGSLGHFMTWGCP--AHV
F++Y HGI+ + P TPQ N V+ER N+T+++ V SM+ A+LP SFWG A++ ++N PS ++ + P +W ++ S H +GC AHV
Subjt: FQDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVS-QTPYELWKRRKGSLGHFMTWGCP--AHV
Query: LAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKN
+ KL+ +S C+F+GY E G +DP + KV S + F E +R S+ V I N
Subjt: LAQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKN
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.0e-13 | 24.14 | Show/hide |
Query: DYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVS-QTPYELWKRRKGSLGHFMTWGCPAH--VLA
+Y +HGI P TP+ N +SER ++ +++ +++S A +P ++W YA + + ++N +P+ + ++P++ + +GC + +
Subjt: DYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVS-QTPYELWKRRKGSLGHFMTWGCPAH--VLA
Query: QNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLE
N KL+ +S+ C+F+GY L Q +++++S + F E
Subjt: QNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLE
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 3.6e-14 | 26.71 | Show/hide |
Query: QDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVS-QTPYELWKRRKGSLGHFMTWGCPAH--VL
+DYL +HGI P TP+ N +SER ++ ++++ +++S A +P ++W YA + + ++N +P+ + Q+P++ + + +GC + +
Subjt: QDYLIEHGIQSQLFAPSTPQQNDVSERGNQTLLDVVCSMMSFAQLPDSFWGYALEITICILNNVPSKSVS-QTPYELWKRRKGSLGHFMTWGCPAH--VL
Query: AQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLE
N KLE +SK C F+GY L +++ S + F E
Subjt: AQNPKKLEHRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLE
|
|
