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Cmc08g0230301 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0230301
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr08:25797666..25798199
RNA-Seq ExpressionCmc08g0230301
SyntenyCmc08g0230301
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU44375.1 hypothetical protein TSUD_243070 [Trifolium subterraneum]5.7e-4155.26Show/hide
Query:  NIIGYKWVFCTKYNPD-DLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        N+IG KWVF TK N D  +D      RLVAKG+ Q+ G DFGE FSP+ K  TIRII +L   + W LKQLDVKN FL+G   E VYM QP  F+    P
Subjt:  NIIGYKWVFCTKYNPD-DLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLT
        NHVC +H SLYGLKQ+PRAWFE+ ++ L +LGF+ S  DPSLFI   +++ T
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLT

PNY16899.1 copia-like polyprotein, partial [Trifolium pratense]2.2e-4053.95Show/hide
Query:  NIIGYKWVFCTKYNPD-DLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        N++G KWVF TK N D  +D      RLVAKG+ Q+ G DFGE FSP+ K  TIR+I +L   + W LKQLDVKN FL+G   E VYM QP  F+     
Subjt:  NIIGYKWVFCTKYNPD-DLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLT
        NHVC +H SLYGLKQ+PRAWFE+ ++ LF+LGF+ S  DPSLFI   +++ T
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLT

TYK00083.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.6e-5177.95Show/hide
Query:  RLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCLVHTSLYGLKQSPRAWFERFTS
        RLVAKG+ QV GFDF E  SP+ KK TI+II AL AQY+WSL QLDVKNVFL+G+ QETVYMSQPT+FQDKTCPNHVCL+H SLYGLKQ+PRAWFE FTS
Subjt:  RLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCLVHTSLYGLKQSPRAWFERFTS

Query:  YLFTLGFVASNVDPSLFIQALESSLTY
        YLFTLGFV SN DPSLFI+++ SSLTY
Subjt:  YLFTLGFVASNVDPSLFIQALESSLTY

XP_016902519.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]4.7e-5167.97Show/hide
Query:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        MN++G KWVF  KYNPD         RLVAKG+ QVQGFDF E FSP+ KKSTIRII ALVAQYNWSL  LDVKN FL+G+ QETVYM+QPT FQDK   
Subjt:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY
          +C+  T +YG+KQ+PRAWFE FTSYLFTLGFVAS  DPSLFI+++ SSLTY
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY

XP_022158189.1 uncharacterized protein LOC111024722 [Momordica charantia]1.7e-4556.86Show/hide
Query:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        MN++G KWVF TK+N D         RL+AKG+ +++GFDF E FSP+ KK TIR++ +L A +NWSL QLDVKNVFL+G  Q+ V+M Q   F D +CP
Subjt:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY
        ++VC +H SLYGLKQ+PRAWF+RFT+YLFTLGF AS  D SLF+++++ SLT+
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY

TrEMBL top hitse value%identityAlignment
A0A1S4E2Q9 uncharacterized mitochondrial protein AtMg00810-like2.3e-5167.97Show/hide
Query:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        MN++G KWVF  KYNPD         RLVAKG+ QVQGFDF E FSP+ KKSTIRII ALVAQYNWSL  LDVKN FL+G+ QETVYM+QPT FQDK   
Subjt:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY
          +C+  T +YG+KQ+PRAWFE FTSYLFTLGFVAS  DPSLFI+++ SSLTY
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY

A0A2N9FTW7 Reverse transcriptase Ty1/copia-type domain-containing protein7.3e-4256.58Show/hide
Query:  NIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPN
        NIIG +WV+  K N D         RLVAKGF Q    DF E FSP+ K  T+RII +L AQ+ WSL+QLD+ N FLYG  +E V+M QP  F +  CPN
Subjt:  NIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPN

Query:  HVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY
        HVC +H SLYGLKQ+PRAWFERFTS+L T+GF AS  DPSLF+    S+L Y
Subjt:  HVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY

A0A5D3BJZ6 Putative mitochondrial protein1.7e-5177.95Show/hide
Query:  RLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCLVHTSLYGLKQSPRAWFERFTS
        RLVAKG+ QV GFDF E  SP+ KK TI+II AL AQY+WSL QLDVKNVFL+G+ QETVYMSQPT+FQDKTCPNHVCL+H SLYGLKQ+PRAWFE FTS
Subjt:  RLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCLVHTSLYGLKQSPRAWFERFTS

Query:  YLFTLGFVASNVDPSLFIQALESSLTY
        YLFTLGFV SN DPSLFI+++ SSLTY
Subjt:  YLFTLGFVASNVDPSLFIQALESSLTY

A0A5D3DQS0 Putative mitochondrial protein2.3e-5167.97Show/hide
Query:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        MN++G KWVF  KYNPD         RLVAKG+ QVQGFDF E FSP+ KKSTIRII ALVAQYNWSL  LDVKN FL+G+ QETVYM+QPT FQDK   
Subjt:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY
          +C+  T +YG+KQ+PRAWFE FTSYLFTLGFVAS  DPSLFI+++ SSLTY
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY

A0A6J1DYN6 uncharacterized protein LOC1110247228.3e-4656.86Show/hide
Query:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        MN++G KWVF TK+N D         RL+AKG+ +++GFDF E FSP+ KK TIR++ +L A +NWSL QLDVKNVFL+G  Q+ V+M Q   F D +CP
Subjt:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY
        ++VC +H SLYGLKQ+PRAWF+RFT+YLFTLGF AS  D SLF+++++ SLT+
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.0e-2441.67Show/hide
Query:  NIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTC-P
        NI+  +WVF  KYN +  + +    RLVA+GF Q    D+ E F+P+A+ S+ R I +LV QYN  + Q+DVK  FL G  +E +YM  P   Q  +C  
Subjt:  NIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTC-P

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFI
        ++VC ++ ++YGLKQ+ R WFE F   L    FV S+VD  ++I
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFI

P0C2J7 Transposon Ty4-H Gag-Pol polyprotein5.1e-0829.06Show/hide
Query:  RLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCLVHTSLYGLKQSPRAWFERFTS
        R+V +G  Q     +  I +     + I+I   +    N  +K LD+ + FLY   +E +Y+  P    D+ C   V  ++ +LYGLKQSP+ W +    
Subjt:  RLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCLVHTSLYGLKQSPRAWFERFTS

Query:  YLFTLGFVASNVDPSLF
        YL  +G   ++  P L+
Subjt:  YLFTLGFVASNVDPSLF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-2641.01Show/hide
Query:  KWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCLV
        KWVF  K    D   +    RLV KGF Q +G DF EIFSP+ K ++IR I +L A  +  ++QLDVK  FL+G  +E +YM QP  F+     + VC +
Subjt:  KWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCLV

Query:  HTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQ
        + SLYGLKQ+PR W+ +F S++ +  ++ +  DP ++ +
Subjt:  HTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQ

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.7e-3545.75Show/hide
Query:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        + I+G +W+F  KYN D         RLVAKG+ Q  G D+ E FSP+ K ++IRI+  +    +W ++QLDV N FL G   + VYMSQP  F DK  P
Subjt:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY
        N+VC +  +LYGLKQ+PRAW+    +YL T+GFV S  D SLF+     S+ Y
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.4e-3443.79Show/hide
Query:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP
        + I+G +W+F  K+N D         RLVAKG+ Q  G D+ E FSP+ K ++IRI+  +    +W ++QLDV N FL G   + VYMSQP  F DK  P
Subjt:  MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCP

Query:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY
        ++VC +  ++YGLKQ+PRAW+    +YL T+GFV S  D SLF+     S+ Y
Subjt:  NHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTY

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.1e-2943.15Show/hide
Query:  IGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQ----DKTC
        IG KWV+  KYN D         RLVAKG+ Q +G DF E FSP+ K +++++I A+ A YN++L QLD+ N FL G   E +YM  P  +     D   
Subjt:  IGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQ----DKTC

Query:  PNHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQ
        PN VC +  S+YGLKQ+ R WF +F+  L   GFV S+ D + F++
Subjt:  PNHVCLVHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQ

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)3.0e-0841.11Show/hide
Query:  NIIGYKWVFCTKYNPD-DLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQ------YNWSLKQLDVKNVFLYGVFQE
        NI+G KWVF TK + D  LD L    RLVAKGF Q +G  F E +SP+ + +TIR I  +  Q       NW  K       F  G+F++
Subjt:  NIIGYKWVFCTKYNPD-DLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQ------YNWSLKQLDVKNVFLYGVFQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATTATTGGCTATAAATGGGTTTTTTGTACAAAATATAATCCTGATGACTTGGATTGCTTGTCACAAAGCACACGCCTAGTTGCTAAAGGTTTTATCCAG
GTACAAGGTTTTGATTTTGGTGAAATTTTTAGTCCTATTGCCAAGAAATCTACTATACGAATTATTTTTGCTCTTGTTGCTCAATACAATTGGTCCTTGAAACAG
TTAGATGTCAAAAATGTCTTTCTTTATGGTGTTTTCCAAGAAACAGTGTACATGTCTCAACCTACTAGTTTCCAGGATAAAACATGTCCAAATCACGTGTGTCTT
GTACATACGAGTCTTTATGGCCTCAAACAGTCCCCTCGTGCTTGGTTTGAACGATTTACCTCTTATTTATTTACTCTGGGTTTTGTTGCTTCTAACGTTGATCCC
TCTTTATTCATTCAAGCACTCGAATCTTCTCTCACTTACTCATGTAGAAGACATCATTGTCACTGGCTCCGACTCTTCCTATATCTCTCTTCTAAAAAATCAAAT
GGCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATATTATTGGCTATAAATGGGTTTTTTGTACAAAATATAATCCTGATGACTTGGATTGCTTGTCACAAAGCACACGCCTAGTTGCTAAAGGTTTTATCCAG
GTACAAGGTTTTGATTTTGGTGAAATTTTTAGTCCTATTGCCAAGAAATCTACTATACGAATTATTTTTGCTCTTGTTGCTCAATACAATTGGTCCTTGAAACAG
TTAGATGTCAAAAATGTCTTTCTTTATGGTGTTTTCCAAGAAACAGTGTACATGTCTCAACCTACTAGTTTCCAGGATAAAACATGTCCAAATCACGTGTGTCTT
GTACATACGAGTCTTTATGGCCTCAAACAGTCCCCTCGTGCTTGGTTTGAACGATTTACCTCTTATTTATTTACTCTGGGTTTTGTTGCTTCTAACGTTGATCCC
TCTTTATTCATTCAAGCACTCGAATCTTCTCTCACTTACTCATGTAGAAGACATCATTGTCACTGGCTCCGACTCTTCCTATATCTCTCTTCTAAAAAATCAAAT
GGCACTTGA
Protein sequenceShow/hide protein sequence
MNIIGYKWVFCTKYNPDDLDCLSQSTRLVAKGFIQVQGFDFGEIFSPIAKKSTIRIIFALVAQYNWSLKQLDVKNVFLYGVFQETVYMSQPTSFQDKTCPNHVCL
VHTSLYGLKQSPRAWFERFTSYLFTLGFVASNVDPSLFIQALESSLTYSCRRHHCHWLRLFLYLSSKKSNGT