; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0230421 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0230421
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description50S ribosomal protein L18
Genome locationCMiso1.1chr08:26048221..26050800
RNA-Seq ExpressionCmc08g0230421
SyntenyCmc08g0230421
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06187.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]7.3e-6299.22Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLIL+NNVDDDAAQSNYQ
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

XP_011653002.1 uncharacterized protein LOC101206481 [Cucumis sativus]4.4e-5994.57Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MT+LKRYVLRLF+SLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADI KEIEKKGF+N TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLIL+NNVDD+AAQSNYQ
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

XP_016902998.1 PREDICTED: uncharacterized protein LOC103501501 [Cucumis melo]1.9e-62100Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]1.7e-5589.92Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLIL+NN DDDA++ +Y+
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]1.2e-5691.47Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHAD+NKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVN+LKNNGVKLIL+NNV DDA++S+YQ
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

TrEMBL top hitse value%identityAlignment
A0A0A0KX15 Uncharacterized protein2.1e-5994.57Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MT+LKRYVLRLF+SLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADI KEIEKKGF+N TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLIL+NNVDD+AAQSNYQ
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

A0A1S4E442 uncharacterized protein LOC1035015019.3e-63100Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

A0A5A7SM55 50S ribosomal protein L189.3e-63100Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

A0A5D3C2Z2 50S ribosomal protein L183.5e-6299.22Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLIL+NNVDDDAAQSNYQ
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

A0A6J1FXG0 uncharacterized protein LOC1114484608.4e-5689.92Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ
        AIVNSLKNNGVKLIL+NN DDDA++ +Y+
Subjt:  AIVNSLKNNGVKLILNNNVDDDAAQSNYQ

SwissProt top hitse value%identityAlignment
A9M3V0 50S ribosomal protein L182.5e-0430.56Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV
        LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +AAAIVG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q5F5U3 50S ribosomal protein L182.5e-0430.56Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV
        LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +AAAIVG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q5P316 50S ribosomal protein L181.9e-0430.28Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV
        LK   L +F +  +I A V+D +  RV+A ASTVE  +++ L  G   N +AA +VG+++A R K  G+E               ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV

Query:  NSLKNNGVK
         + +  G+K
Subjt:  NSLKNNGVK

Q7DDT0 50S ribosomal protein L182.5e-0430.56Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV
        LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +AAAIVG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q9JQQ6 50S ribosomal protein L182.5e-0430.56Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV
        LK   L +F S  +I A V+     +V+A AST+E  ++ SL+ G   N +AAAIVG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein1.7e-5381.97Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW
        MTVLKRYVLRLF+S+KYITANVVDRNNGR+V TASTVEH+IKNSLECGR+CNAKAAAIVGEVLAMRLKV+GL+ GQGRGIHAD+ KEIEKKGF++RTK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIW

Query:  AIVNSLKNNGVKLILNNNVDDD
        A++NSL+NNGV LIL+++ DDD
Subjt:  AIVNSLKNNGVKLILNNNVDDD

AT5G27820.1 Ribosomal L18p/L5e family protein7.4e-0426.13Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV
        LK YVL++  + K++ A V+      V  +AS+ E +++ +++  R  +  AA+ +G++L  RL +  +       +   + KE    G     K+ A++
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIV

Query:  NSLKNNGVKLI
        +S++  GVKL+
Subjt:  NSLKNNGVKLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTATTAAAGCGCTATGTGTTGCGATTATTCATATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAATAATGGACGAGTTGTCGCAACTGCATCCACGGT
GGAACACTCCATCAAAAACTCACTTGAATGTGGTCGGTCTTGTAACGCGAAGGCAGCAGCAATTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGACGGTCTCGAAC
AGGGGCAAGGAAGAGGGATTCACGCGGACATAAACAAAGAAATTGAGAAGAAAGGCTTCAGAAACCGCACAAAAATCTGGGCTATAGTGAATTCACTAAAGAATAACGGA
GTTAAACTCATTCTCAACAACAATGTCGACGACGATGCAGCTCAATCGAACTACCAATAA
mRNA sequenceShow/hide mRNA sequence
TTTCACACTGCCTTTGATCTGCACCACTGTCTCTCTGGAGCTTACCCACCACCCTGTCTCGACGACATTGAAGCTTCTTCGGCCATTATCGCCGGCAATCCACCAATATC
CTCACGGCTCACTGTAACCCACCACGCTCCCTGCTTCAGCGTTTCGCTCTCATTTCTGGGTTGCATTCATTCACCCTCCCTCAGCGCCTAATTCTCATCTCTCAGCGGCT
TTTGATAAAATCACTGCTGGGAATGACAGTATTAAAGCGCTATGTGTTGCGATTATTCATATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAATAATGGACGAG
TTGTCGCAACTGCATCCACGGTGGAACACTCCATCAAAAACTCACTTGAATGTGGTCGGTCTTGTAACGCGAAGGCAGCAGCAATTGTTGGAGAGGTGTTGGCTATGCGA
CTCAAAGTTGACGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACGCGGACATAAACAAAGAAATTGAGAAGAAAGGCTTCAGAAACCGCACAAAAATCTGGGCTATAGT
GAATTCACTAAAGAATAACGGAGTTAAACTCATTCTCAACAACAATGTCGACGACGATGCAGCTCAATCGAACTACCAATAACCATCAAAAAGCGATCTTATTGTTCATC
CCTAAGAAAAAAGGGGGTGGAGCTAGAGCTCGACCATCATGAAAGACTAGATGCTGCTAAAATGGAAGGTACTATCTTTGTTAGTCATAATCAAATTAAACATCAGTCAC
TCATGATATTTGGAAGTTTATAAAGTAGAGGCAGCTTTTTATCTCCGCTTAGAAAATGGTGGCATATTGACATAGTGATACCACAGCACATTTGGGCTAATGATAATGTT
ATTACAGTAAAATGGCCTTACATGATCATCAAACTCTACACAACTTTCTCCTCTTTCTTCTCTGTTTTTACCTGGATTTTTTTCTCCTTCTACTGGTTTAAGAGTTGTAT
AGAGATTAGCTTTTGTTTTCTGGTTTAAGAGGCTGTCTTTTTCTTGCTTGTGCTGTCTGGTATGACTGTTGCGTGAAAGAATTGTAGAATAAAAAACACTTATTCAGTCT
TTTCAGGTTTTTGAATGAAAATTTCATTTCGTAAGA
Protein sequenceShow/hide protein sequence
MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNG
VKLILNNNVDDDAAQSNYQ