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Cmc08g0230491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0230491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationCMiso1.1chr08:26152602..26153631
RNA-Seq ExpressionCmc08g0230491
SyntenyCmc08g0230491
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048199.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.8e-1663.75Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP
        MAT  SQ+D     +P  S P   S     V+TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF HIDD+LP
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.0e-1563.75Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP
        MAT  SQ+D     +P  S P   S     V TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF HIDD+LP
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP

KAE8649781.1 hypothetical protein Csa_012983 [Cucumis sativus]9.7e-1563.75Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP
        MAT  SQ+D I +  P   + + P+P    V TS LFLL NICNLVP+ LDS N++LWKYQVSSILKAHSLF HIDDSLP
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP

KGN50818.1 hypothetical protein Csa_018838 [Cucumis sativus]3.6e-1770.51Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDS
        MATS SQ D I+T+ P N IPT  SPQ Q V TS LFLL NICN VPL LDSTN++L KYQVSSILKAH +F HIDDS
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDS

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]8.8e-1663.75Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP
        MAT  SQ+D     +P  S P   S     V+TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF HIDD+LP
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP

TrEMBL top hitse value%identityAlignment
A0A0A0KMJ5 Uncharacterized protein1.7e-1770.51Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDS
        MATS SQ D I+T+ P N IPT  SPQ Q V TS LFLL NICN VPL LDSTN++L KYQVSSILKAH +F HIDDS
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDS

A0A5A7U426 Putative mitochondrial protein4.3e-1663.75Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP
        MAT  SQ+D     +P  S P   S     V+TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF HIDD+LP
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP

A0A5A7UZE5 Putative mitochondrial protein9.5e-1663.75Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP
        MAT  SQ+D     +P  S P   S     V TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF HIDD+LP
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP

A0A5A7VGG0 Retrotransposon protein8.0e-1562.5Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP
        MAT  SQ+D     +   S P   S     V TS LFLL NICNLVP+ LDSTN+ILWKYQVSSILKAHS F HIDD+LP
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP

A0A5D3CCL2 Retrotransposon protein4.3e-1663.75Show/hide
Query:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP
        MAT  SQ+D     +P  S P   S     V+TS LFLL NICNLVP+ LDSTN++LWKYQVSSILKAHSLF HIDD+LP
Subjt:  MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCTCCAAATCCCAAAATGATCAAATCACCACTGAAATTCCTACCAATTCCATTCCCACAAAGCCATCACCACAAAAGCAAATTGTTACTACTTCCATTCTCTT
CTTGCTCTGCAATATTTGCAACCTCGTACCCCTTTGTCTAGACTCCACGAACTTTATTCTATGGAAGTACCAAGTTTCTTCCATTCTCAAAGCCCATTCCCTTTTCAGCC
ACATTGATGATTCTCTTCCTGCCCTCCAAAATTCTTACCTTCATCAGCTGCTAAAACCAATCCAGAATATCTTCAATGGATCTTACATGACCAAGCCCTCATCACCCTCA
TAA
mRNA sequenceShow/hide mRNA sequence
TCTCCTTCCATAATTTAAGCCCCTAATTATAAATTAATTATAATTAATTGTCATTATTTTCTATCATATTTATCTCATTATAATCATATAAATGTTCACATCTATCAATG
AAATTAATCATTCAGTATAATTTCTTTTACAATTCTTATATGGTATCAAAGCTTCTCTTAAACTAGATTTTTTTCTACATACCACTTCTCAATGGCCACCTCCAAATCCC
AAAATGATCAAATCACCACTGAAATTCCTACCAATTCCATTCCCACAAAGCCATCACCACAAAAGCAAATTGTTACTACTTCCATTCTCTTCTTGCTCTGCAATATTTGC
AACCTCGTACCCCTTTGTCTAGACTCCACGAACTTTATTCTATGGAAGTACCAAGTTTCTTCCATTCTCAAAGCCCATTCCCTTTTCAGCCACATTGATGATTCTCTTCC
TGCCCTCCAAAATTCTTACCTTCATCAGCTGCTAAAACCAATCCAGAATATCTTCAATGGATCTTACATGACCAAGCCCTCATCACCCTCATAAACGCAACCTTATCACC
CTCTACCCTTGCTCATGTCGTTGGCTCAACCTTTTCAAAATCATTGTGATTCTCTCTAGAAAAGAGATATTCTTCCAATATCATAGCCAATATCCTCGACCTCAGATCTA
CACTTTACACCATGAAAAAATGCATCTGAAATGATTGAACAATATACTTCTTGAATCAAAGCACTTGTTGACAAGCTTGTCGTCGCCTCTGTTTCTCTAAAAGAAGAAGA
AATCTTAGTTCACACCTTAAATGGTCTTCCTGTAGCTTTCAATGTCTTTCGCACATCAATTAGAACTCAAAGTGGTATTATCATCTCCCTTAAAGAGCTTCACACCTTAC
TCATCTCAAAAGAATCCACCATAGCAAAATCATCTGCCATTGAAGCTTTTCCCACTGCCATTCCCGTCGTACATAATTTTCACACATCTCATAGAAGCTGTAAAAGAGGA
AGAAAGAATGGTAACCCTAATTTTTATTCCCAAAATAACT
Protein sequenceShow/hide protein sequence
MATSKSQNDQITTEIPTNSIPTKPSPQKQIVTTSILFLLCNICNLVPLCLDSTNFILWKYQVSSILKAHSLFSHIDDSLPALQNSYLHQLLKPIQNIFNGSYMTKPSSPS