CuGenDBv2

Gene ID	Cmc08g0230581
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr08:26226360..26226779
RNA-Seq Expression	Cmc08g0230581
Synteny	Cmc08g0230581
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036879.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.8e-59

84.17

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAPVVFMDLMN VF++F+DTFVI+FIDDIL++SKTEAEHEE+LRMVL+TLR NKLYAKFSKCEFWLK VSFLGHVVSKDGVS+DPAKIE VT W
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
         RPSTVSEVRSFL L  YYRWFVE+F RI TPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

KAA0047197.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-58

82.73

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAP +FMDL+N VF++F+DTFVI+FIDDIL++SKTEAEHEEHLR+VL+TLR NKLYAKFSKCEFWLK VSFLGHV SK GVS+DPAKIE VTSW
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        PRPSTVSEVRSFL L  YYRWFVE+F RIATPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

KAA0059783.1 pol protein [Cucumis melo var. makuwa]

9.6e-60

84.89

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAP VFMDLMN VF++F+DTFVI+FIDDIL++SK EAEHEEHLRMVL+TLR NKLYAKFSKCEFWLK VSFLGHVVSK GVS+DPAKIE VTSW
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        PRPSTVSEVRSFL L  YYRWFVE+F RIATPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

TYK16039.1 pol protein [Cucumis melo var. makuwa]

2.4e-58

84.17

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAP VFMDLMN VF+ F+DTFVI+FI+DIL++SKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKHVSFLGHVVSK GVS+DPAKIE VTSW
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        PRPSTV+EVRSFL L  YYR FVE+F RIATPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

TYK29834.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.4e-58

82.73

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAP VFMDLMN VF++F+DTFVI+F DDIL++SK EAEHE+HLRMVL+TLR NKLYAKFSKCEFWLK +SFLGHVVSK GVS+DPAKIE VTSW
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        PRPSTVSEVRSFL L  YYRWFVE+F RIATPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T673 Ty3-gypsy retrotransposon protein

1.4e-59

84.17

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAPVVFMDLMN VF++F+DTFVI+FIDDIL++SKTEAEHEE+LRMVL+TLR NKLYAKFSKCEFWLK VSFLGHVVSKDGVS+DPAKIE VT W
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
         RPSTVSEVRSFL L  YYRWFVE+F RI TPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

A0A5A7TIR9 Pol protein

1.1e-58

84.17

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAP VFMDLMN VF+ F+DTFVI+FI+DIL++SKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKHVSFLGHVVSK GVS+DPAKIE VTSW
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        PRPSTV+EVRSFL L  YYR FVE+F RIATPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

A0A5A7TZ38 Reverse transcriptase

6.7e-59

82.73

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAP +FMDL+N VF++F+DTFVI+FIDDIL++SKTEAEHEEHLR+VL+TLR NKLYAKFSKCEFWLK VSFLGHV SK GVS+DPAKIE VTSW
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        PRPSTVSEVRSFL L  YYRWFVE+F RIATPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

A0A5A7UV33 Pol protein

4.6e-60

84.89

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAP VFMDLMN VF++F+DTFVI+FIDDIL++SK EAEHEEHLRMVL+TLR NKLYAKFSKCEFWLK VSFLGHVVSK GVS+DPAKIE VTSW
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        PRPSTVSEVRSFL L  YYRWFVE+F RIATPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

A0A5D3E1T8 Ty3-gypsy retrotransposon protein

6.7e-59

82.73

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        MSFGLTNAP VFMDLMN VF++F+DTFVI+F DDIL++SK EAEHE+HLRMVL+TLR NKLYAKFSKCEFWLK +SFLGHVVSK GVS+DPAKIE VTSW
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        PRPSTVSEVRSFL L  YYRWFVE+F RIATPL QLTRK
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

7.5e-23

37.41

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        M FGL NAP  F   MN + +  ++   ++++DDI+V S +  EH + L +V + L    L  +  KCEF  +  +FLGHV++ DG+  +P KIE +  +
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        P P+   E+++FL LT YYR F+ +F  IA P+ +  +K
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

P0CT41 Transposon Tf2-12 polyprotein

4.2e-18

33.09

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        M +G++ AP  F   +N +  +  ++ V+ ++DDIL+HSK+E+EH +H++ VL+ L+   L    +KCEF    V F+G+ +S+ G +     I+ V  W
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
         +P    E+R FL   +Y R F+    ++  PL  L +K
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

6.3e-22

36.23

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        + FGL NA  +F   ++ V ++ I     +++DD+++ S+ E++H  H+  VLK L    +     K  F+ + V +LG +VSKDG   DP K++ +  +
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTR
        P P  V +VRSFL L SYYR F++DF  IA P+  + +
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTR

P20825 Retrovirus-related Pol polyprotein from transposon 297

4.4e-23

35.97

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        M FGL NAP  F   MN + +  ++   ++++DDI++ S +  EH   +++V   L    L  +  KCEF  K  +FLGH+V+ DG+  +P K++ + S+
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        P P+   E+R+FL LT YYR F+ ++  IA P+    +K
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.5e-23

37.68

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Query:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW
        + FGL NAP +F  +++ + ++ I     ++IDDI+V S+    H ++LR+VL +L    L     K  F    V FLG++V+ DG+  DP K+  ++  
Subjt:  MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSW

Query:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTR
        P P++V E++ FL +TSYYR F++D+ ++A PL  LTR
Subjt:  PRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.0e-18

43.62

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Query:  HLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLG--HVVSKDGVSMDPAKIEVVTSWPRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK
        HL MVL+    ++ YA   KC F    +++LG  H++S +GVS DPAK+E +  WP P   +E+R FL LT YYR FV+++ +I  PL +L +K
Subjt:  HLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLG--HVVSKDGVSMDPAKIEVVTSWPRPSTVSEVRSFLDLTSYYRWFVEDFFRIATPLAQLTRK

Sequences

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CDS sequence

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ATGTCCTTTGGATTGACAAATGCTCCAGTAGTGTTTATGGATTTAATGAACATAGTGTTTAAGGATTTCATAGACACTTTCGTGATTATATTCATTGATGATATCTTGGT
GCATTCCAAGACAGAGGCAGAGCATGAGGAGCATTTACGTATGGTTCTAAAGACCCTTCGAACCAATAAACTATATGCAAAGTTTTCAAAATGTGAGTTTTGGTTGAAGC
ATGTATCTTTTCTAGGCCATGTGGTTTCTAAAGATGGTGTTTCTATGGATCCAGCTAAGATAGAAGTTGTTACCAGTTGGCCCCGACCTTCCACAGTTAGTGAAGTTCGT
AGCTTTCTGGATTTAACAAGCTATTACCGATGGTTTGTGGAGGACTTCTTCCGTATAGCTACTCCCCTTGCTCAGTTAACCAGGAAATGA

mRNA sequence

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Protein sequence

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MSFGLTNAPVVFMDLMNIVFKDFIDTFVIIFIDDILVHSKTEAEHEEHLRMVLKTLRTNKLYAKFSKCEFWLKHVSFLGHVVSKDGVSMDPAKIEVVTSWPRPSTVSEVR
SFLDLTSYYRWFVEDFFRIATPLAQLTRK

Cmc08g0230581 (gene) of Melon (Charmono) v1.1 genome