; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0230951 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0230951
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationCMiso1.1chr08:26924571..26925260
RNA-Seq ExpressionCmc08g0230951
SyntenyCmc08g0230951
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]1.8e-11692.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

TYK04936.1 F15O4.13 [Cucumis melo var. makuwa]1.8e-11692.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

TYK11702.1 F15O4.13 [Cucumis melo var. makuwa]1.8e-11692.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.8e-11692.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]1.8e-11692.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

TrEMBL top hitse value%identityAlignment
A0A5D3BWE8 F15O4.138.9e-11792.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

A0A5D3C3D3 F15O4.138.9e-11792.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

A0A5D3CK70 F15O4.138.9e-11792.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

A0A5D3DGA7 Transposon Ty3-I Gag-Pol polyprotein8.9e-11792.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

A0A5D3DRJ1 F15O4.138.9e-11792.58Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        MHV DEWKTAFKTKFGLYEWLVMPFGL NAPST MRLMNHVLK+YIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSF LEQ++FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        GFIVGKD VKVDEEKVK IREWPTPTNASEVRSFHGL SFYRRFIKDFSSIASPLTE VKKHVKFEWKEKQENAFNELKEKLIK P LALPNFDKSFEIE
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVLVQEKQPIMFFNEKLNGA
         DASGI IGAVL+QEKQPIMFF+EKLNGA
Subjt:  YDASGICIGAVLVQEKQPIMFFNEKLNGA

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.67.9e-4639.82Show/hide
Query:  KTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIVGKD
        KTAF TK G YE+L MPFGL NAP+T  R MN +L+  + K  +VY DDI+V+S  L++H+  +  +  KL +  L     KC F  ++  FLG ++  D
Subjt:  KTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIVGKD

Query:  RVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQ-ENAFNELKEKLIKTPYLALPNFDKSFEIEYDASGI
         +K + EK++ I+++P PT   E+++F GLT +YR+FI +F+ IA P+T+ +KK++K +    + ++AF +LK  + + P L +P+F K F +  DAS +
Subjt:  RVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQ-ENAFNELKEKLIKTPYLALPNFDKSFEIEYDASGI

Query:  CIGAVLVQEKQPIMFFNEKLN
         +GAVL Q+  P+ + +  LN
Subjt:  CIGAVLVQEKQPIMFFNEKLN

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.3e-4342.31Show/hide
Query:  DEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIV
        D  KT+F    G YE+  +PFGL NA S   R ++ VL++ IGK   VY DD++++S+  +DH+ H+ T+L  L +  +  + +K  FF E V +LGFIV
Subjt:  DEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIV

Query:  GKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVK-----------KHVKFEWKEKQENAFNELKEKLI-KTPYLALPN
         KD  K D EKVK I+E+P P    +VRSF GL S+YR FIKDF++IA P+T+ +K           K +  E+ E Q NAF  L+  L  +   L  P+
Subjt:  GKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVK-----------KHVKFEWKEKQENAFNELKEKLI-KTPYLALPN

Query:  FDKSFEIEYDASGICIGAVLVQEKQPIMFFNEKL
        F K F++  DAS   IGAVL QE +PI   +  L
Subjt:  FDKSFEIEYDASGICIGAVLVQEKQPIMFFNEKL

P20825 Retrovirus-related Pol polyprotein from transposon 2971.1e-4742.99Show/hide
Query:  KTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIVGKD
        KTAF TK G YE+L MPFGL NAP+T  R MN++L+  + K  +VY DDI+++S  L +H+  ++ +  KL +  L     KC F  ++ NFLG IV  D
Subjt:  KTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIVGKD

Query:  RVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQE-NAFNELKEKLIKTPYLALPNFDKSFEIEYDASGI
         +K +  KVK I  +P PT   E+R+F GLT +YR+FI +++ IA P+T  +KK  K + ++ +   AF +LK  +I+ P L LP+F+K F +  DAS +
Subjt:  RVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQE-NAFNELKEKLIKTPYLALPNFDKSFEIEYDASGI

Query:  CIGAVLVQEKQPIMFFNEKLN
         +GAVL Q   PI F +  LN
Subjt:  CIGAVLVQEKQPIMFFNEKLN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.0e-4139.57Show/hide
Query:  KTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIVGKD
        KTAF T  G YE+L +PFGL NAP+   R+++ +L+++IGK   VY DDI+V+S+  + H  +++ +L  L +  L  N +K  F   QV FLG+IV  D
Subjt:  KTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIVGKD

Query:  RVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVK-----------KHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKS
         +K D +KV+ I E P PT+  E++ F G+TS+YR+FI+D++ +A PLT   +             V     E    +FN+LK  L  +  LA P F K 
Subjt:  RVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVK-----------KHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKS

Query:  FEIEYDASGICIGAVLVQEKQ----PIMFFNEKLN
        F +  DAS   IGAVL Q+ Q    PI + +  LN
Subjt:  FEIEYDASGICIGAVLVQEKQ----PIMFFNEKLN

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.6e-3838.72Show/hide
Query:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL
        M  +D +KTAF T  G YE+ VMPFGL NAPST  R M    +    +FV VY DDIL++S+   +H  H+ T+L +L+ E L    KKC F  E+  FL
Subjt:  MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFL

Query:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE
        G+ +G  ++   + K   IR++PTP    + + F G+ ++YRRFI + S IA P+  F+    K +W EKQ+ A ++LK+ L  +P L   N   ++ + 
Subjt:  GFIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIE

Query:  YDASGICIGAVL--VQEKQPIM----FFNEKLNGA
         DAS   IGAVL  V  K  ++    +F++ L  A
Subjt:  YDASGICIGAVL--VQEKQPIM----FFNEKLNGA

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.2e-1938.46Show/hide
Query:  HVKTILLKLREEKLYANFKKCSFFLEQVNFLG--FIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEW
        H+  +L    + + YAN KKC+F   Q+ +LG   I+  + V  D  K++ +  WP P N +E+R F GLT +YRRF+K++  I  PLTE +KK+   +W
Subjt:  HVKTILLKLREEKLYANFKKCSFFLEQVNFLG--FIVGKDRVKVDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEW

Query:  KEKQENAFNELKEKLIKTPYLALPNFDKSF
         E    AF  LK  +   P LALP+    F
Subjt:  KEKQENAFNELKEKLIKTPYLALPNFDKSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGTAAGAGATGAATGGAAAACGGCTTTCAAAACAAAGTTTGGACTTTATGAATGGCTTGTTATGCCGTTTGGTCTTGCTAATGCACCAAGTACTACTATGAGGCT
AATGAATCATGTTTTGAAGAAATACATTGGAAAATTTGTGGTTGTATACTTTGATGATATCCTTGTTTACTCAAAAGGCTTGAATGATCATATTTTGCATGTTAAGACAA
TTTTACTCAAACTTAGAGAAGAGAAGCTTTATGCCAACTTCAAAAAGTGTAGTTTTTTTCTAGAACAAGTAAATTTCTTAGGGTTCATTGTTGGAAAGGATAGAGTGAAG
GTTGATGAAGAAAAGGTAAAGACTATTCGAGAATGGCCAACTCCTACCAATGCATCCGAGGTAAGATCCTTCCATGGTTTGACTAGTTTCTATAGGAGATTTATTAAAGA
TTTTAGTAGCATAGCCTCACCATTAACTGAATTTGTGAAAAAGCATGTGAAATTTGAATGGAAAGAAAAGCAAGAAAATGCATTCAATGAACTTAAAGAAAAATTGATCA
AAACACCTTATCTTGCTTTACCTAACTTTGATAAATCTTTTGAGATAGAATATGATGCAAGTGGGATATGTATAGGGGCTGTTTTGGTGCAAGAAAAGCAACCGATCATG
TTCTTTAATGAAAAGCTAAATGGAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGTAAGAGATGAATGGAAAACGGCTTTCAAAACAAAGTTTGGACTTTATGAATGGCTTGTTATGCCGTTTGGTCTTGCTAATGCACCAAGTACTACTATGAGGCT
AATGAATCATGTTTTGAAGAAATACATTGGAAAATTTGTGGTTGTATACTTTGATGATATCCTTGTTTACTCAAAAGGCTTGAATGATCATATTTTGCATGTTAAGACAA
TTTTACTCAAACTTAGAGAAGAGAAGCTTTATGCCAACTTCAAAAAGTGTAGTTTTTTTCTAGAACAAGTAAATTTCTTAGGGTTCATTGTTGGAAAGGATAGAGTGAAG
GTTGATGAAGAAAAGGTAAAGACTATTCGAGAATGGCCAACTCCTACCAATGCATCCGAGGTAAGATCCTTCCATGGTTTGACTAGTTTCTATAGGAGATTTATTAAAGA
TTTTAGTAGCATAGCCTCACCATTAACTGAATTTGTGAAAAAGCATGTGAAATTTGAATGGAAAGAAAAGCAAGAAAATGCATTCAATGAACTTAAAGAAAAATTGATCA
AAACACCTTATCTTGCTTTACCTAACTTTGATAAATCTTTTGAGATAGAATATGATGCAAGTGGGATATGTATAGGGGCTGTTTTGGTGCAAGAAAAGCAACCGATCATG
TTCTTTAATGAAAAGCTAAATGGAGCTTAA
Protein sequenceShow/hide protein sequence
MHVRDEWKTAFKTKFGLYEWLVMPFGLANAPSTTMRLMNHVLKKYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFFLEQVNFLGFIVGKDRVK
VDEEKVKTIREWPTPTNASEVRSFHGLTSFYRRFIKDFSSIASPLTEFVKKHVKFEWKEKQENAFNELKEKLIKTPYLALPNFDKSFEIEYDASGICIGAVLVQEKQPIM
FFNEKLNGA