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Cmc08g0230961 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0230961
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationCMiso1.1chr08:26926004..26926384
RNA-Seq ExpressionCmc08g0230961
SyntenyCmc08g0230961
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067526.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.3e-6796.8Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MAHFIPCNKTDDATNIANLFFREV+RLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIH+TTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]7.3e-6796.8Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MAHFIPCNKTDDATNIANLFFREV+RLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIH+TTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

TYK09768.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.3e-6797.6Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        M HFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIHNTTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.3e-6796.8Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MAHFIPCNKTDDATNIANLFFREV+RLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIH+TTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]7.3e-6796.8Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MAHFIPCNKTDDATNIANLFFREV+RLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIH+TTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

TrEMBL top hitse value%identityAlignment
A0A5A7VM01 Transposon Ty3-I Gag-Pol polyprotein3.6e-6796.8Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MAHFIPCNKTDDATNIANLFFREV+RLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIH+TTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

A0A5D3BWE8 F15O4.133.6e-6796.8Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MAHFIPCNKTDDATNIANLFFREV+RLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIH+TTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

A0A5D3CEW5 Transposon Ty3-I Gag-Pol polyprotein2.1e-6797.6Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        M HFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIHNTTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

A0A5D3DGA7 Transposon Ty3-I Gag-Pol polyprotein3.6e-6796.8Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MAHFIPCNKTDDATNIANLFFREV+RLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIH+TTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

A0A5D3DRJ1 F15O4.133.6e-6796.8Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MAHFIPCNKTDDATNIANLFFREV+RLHGIPKTIVSDRDVKFLSHFWKV+WGKLGTK LFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        VEFAYNRAIH+TTHCSPFEVVYGFN
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.1e-2039.2Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MA  +PC K+  A   A +F + VI   G PK I++D D  F S  WK    K      FS    PQTDGQTE  N+T+  LLR + S +  +W + +  
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        V+ +YN AIH+ T  +PFE+V+ ++
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

P0CT41 Transposon Tf2-12 polyprotein4.1e-2039.2Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MA  +PC K+  A   A +F + VI   G PK I++D D  F S  WK    K      FS    PQTDGQTE  N+T+  LLR + S +  +W + +  
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        V+ +YN AIH+ T  +PFE+V+ ++
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.1e-2443.9Show/hide
Query:  AHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFV
        AHFI   KT DAT + +L FR +   HG P+TI SDRDV+  +  ++ +  +LG K   S+  HPQTDGQ+E   +TL  LLR+ +S N+++W   LP +
Subjt:  AHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFV

Query:  EFAYNRAIHNTTHCSPFEVVYGF
        EF YN     T   SPFE+  G+
Subjt:  EFAYNRAIHNTTHCSPFEVVYGF

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.1e-2443.9Show/hide
Query:  AHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFV
        AHFI   KT DAT + +L FR +   HG P+TI SDRDV+  +  ++ +  +LG K   S+  HPQTDGQ+E   +TL  LLR+  S N+++W   LP +
Subjt:  AHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFV

Query:  EFAYNRAIHNTTHCSPFEVVYGF
        EF YN     T   SPFE+  G+
Subjt:  EFAYNRAIHNTTHCSPFEVVYGF

Q9UR07 Transposon Tf2-11 polyprotein4.1e-2039.2Show/hide
Query:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF
        MA  +PC K+  A   A +F + VI   G PK I++D D  F S  WK    K      FS    PQTDGQTE  N+T+  LLR + S +  +W + +  
Subjt:  MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPF

Query:  VEFAYNRAIHNTTHCSPFEVVYGFN
        V+ +YN AIH+ T  +PFE+V+ ++
Subjt:  VEFAYNRAIHNTTHCSPFEVVYGFN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCATTTCATTCCATGTAACAAAACTGATGATGCTACCAACATAGCTAATCTCTTTTTTAGAGAAGTGATTAGATTGCATGGCATTCCCAAAACTATTGTTAGTGA
TAGGGATGTTAAATTTTTAAGTCATTTTTGGAAAGTTGTGTGGGGAAAATTGGGAACTAAGTTTCTATTTTCTACAACTTGTCACCCACAAACGGATGGGCAAACTGAGG
TGGTTAATAGAACTTTGGGGGCCTTGCTTAGATCACTAATTTCTAAAAATCTTAAGTCTTGGGAAGAGACTCTACCTTTTGTGGAGTTTGCATACAATAGGGCAATTCAT
AACACAACTCATTGTTCACCTTTTGAGGTTGTGTACGGTTTTAACCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCATTTCATTCCATGTAACAAAACTGATGATGCTACCAACATAGCTAATCTCTTTTTTAGAGAAGTGATTAGATTGCATGGCATTCCCAAAACTATTGTTAGTGA
TAGGGATGTTAAATTTTTAAGTCATTTTTGGAAAGTTGTGTGGGGAAAATTGGGAACTAAGTTTCTATTTTCTACAACTTGTCACCCACAAACGGATGGGCAAACTGAGG
TGGTTAATAGAACTTTGGGGGCCTTGCTTAGATCACTAATTTCTAAAAATCTTAAGTCTTGGGAAGAGACTCTACCTTTTGTGGAGTTTGCATACAATAGGGCAATTCAT
AACACAACTCATTGTTCACCTTTTGAGGTTGTGTACGGTTTTAACCTTTGA
Protein sequenceShow/hide protein sequence
MAHFIPCNKTDDATNIANLFFREVIRLHGIPKTIVSDRDVKFLSHFWKVVWGKLGTKFLFSTTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFVEFAYNRAIH
NTTHCSPFEVVYGFNL