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Cmc08g0232201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0232201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr08:28600722..28601018
RNA-Seq ExpressionCmc08g0232201
SyntenyCmc08g0232201
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035470.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-3887.5Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNSEKDLLPFRHGVH SKEQC+KTPQE+EDMRRIPY S VGSLMYVM+CTRPDICYA+GIVSRYQSN  LDHWT VKIILKYL+RTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

KAA0050437.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-3887.5Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNS+K LLPFRHGVH SKEQCSKTPQE+EDMRRIPY SAVGSLMYVM+CTRP+ICYA+GIVSRYQSNP LDHWT VKIILKYL+RTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

KAA0059556.1 gag/pol protein [Cucumis melo var. makuwa]7.3e-3887.5Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNS+K LLPFRHGVH SKEQC KTPQE+EDMRRIPY SAVGSLMY M+CTRPDICYA+GIVSRYQSNP LDHWT VKIILKYLKRTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

KAA0062886.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-3785.23Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNS+K LLPFRHGVH SKEQC KTPQE+EDMRRIPY SAVGSLMY M+CTRPDICY +GIVSRYQSNP LDHWTT+KIILKYL+RTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

TYK31055.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-3887.5Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNSEKDLLPFRHGVH SKEQC+KTPQE+EDMRRIPY S VGSLMYVM+CTRPDICYA+GIVSRYQSN  LDHWT VKIILKYL+RTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

TrEMBL top hitse value%identityAlignment
A0A5A7SWQ7 Gag/pol protein1.6e-3887.5Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNSEKDLLPFRHGVH SKEQC+KTPQE+EDMRRIPY S VGSLMYVM+CTRPDICYA+GIVSRYQSN  LDHWT VKIILKYL+RTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

A0A5A7U7T0 Gag/pol protein1.6e-3887.5Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNS+K LLPFRHGVH SKEQCSKTPQE+EDMRRIPY SAVGSLMYVM+CTRP+ICYA+GIVSRYQSNP LDHWT VKIILKYL+RTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

A0A5A7UZF3 Gag/pol protein3.5e-3887.5Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNS+K LLPFRHGVH SKEQC KTPQE+EDMRRIPY SAVGSLMY M+CTRPDICYA+GIVSRYQSNP LDHWT VKIILKYLKRTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

A0A5A7V8W0 Gag/pol protein6.0e-3885.23Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNS+K LLPFRHGVH SKEQC KTPQE+EDMRRIPY SAVGSLMY M+CTRPDICY +GIVSRYQSNP LDHWTT+KIILKYL+RTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

A0A5D3E6W6 Gag/pol protein1.6e-3887.5Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR
        MQNSEKDLLPFRHGVH SKEQC+KTPQE+EDMRRIPY S VGSLMYVM+CTRPDICYA+GIVSRYQSN  LDHWT VKIILKYL+RTR
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTR

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.4e-0748.08Show/hide
Query:  PYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRT
        P  S +G LMY+M+CTRPD+  A+ I+SRY S    + W  +K +L+YLK T
Subjt:  PYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRT

P0CV72 Secreted RxLR effector protein 1611.2e-1146.55Show/hide
Query:  MRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTRT
        M+ +PY+SAVG++MY+M+ TRPD+  A+G++S++ S+P   HW  +K +L+YL+ T+T
Subjt:  MRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTRT

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-2048.39Show/hide
Query:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTRTTCLC
        M+N++    P    +  SK+ C  T +E  +M ++PY SAVGSLMY M+CTRPDI +A+G+VSR+  NP  +HW  VK IL+YL+ T   CLC
Subjt:  MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTRTTCLC

P25600 Putative transposon Ty5-1 protein YCL074W2.2e-0536Show/hide
Query:  SKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTRTTCL
        SK     T   L+D+   PY S VG L++     RPDI Y + ++SR+   P   H  + + +L+YL  TR+ CL
Subjt:  SKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTRTTCL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.4e-0545.1Show/hide
Query:  YVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRT
        Y   VGSL Y+   TRPD+ YA+  +S+Y   P  DHW  +K +L+YL  T
Subjt:  YVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRT

Arabidopsis top hitse value%identityAlignment
ATMG00810.1 DNA/RNA polymerases superfamily protein9.6e-0442.86Show/hide
Query:  SAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRT
        S VG+L Y+ + TRPDI YA+ IV +    P L  +  +K +L+Y+K T
Subjt:  SAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACTCTGAAAAGGATTTATTACCTTTCAGGCACGGGGTTCACTTTTCTAAGGAACAATGTTCTAAGACGCCTCAAGAACTTGAAGATATGAGACGTATTCCCTA
TGTTTCAGCTGTGGGTAGCTTAATGTATGTTATGATCTGCACTAGGCCAGACATTTGTTATGCAATAGGAATAGTTAGTAGGTATCAGTCTAACCCATGGTTAGACCACT
GGACAACAGTTAAAATTATTCTCAAGTATCTTAAGAGAACGAGAACTACATGCTTGTGTATGCAGCTATGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAACTCTGAAAAGGATTTATTACCTTTCAGGCACGGGGTTCACTTTTCTAAGGAACAATGTTCTAAGACGCCTCAAGAACTTGAAGATATGAGACGTATTCCCTA
TGTTTCAGCTGTGGGTAGCTTAATGTATGTTATGATCTGCACTAGGCCAGACATTTGTTATGCAATAGGAATAGTTAGTAGGTATCAGTCTAACCCATGGTTAGACCACT
GGACAACAGTTAAAATTATTCTCAAGTATCTTAAGAGAACGAGAACTACATGCTTGTGTATGCAGCTATGGATTTGA
Protein sequenceShow/hide protein sequence
MQNSEKDLLPFRHGVHFSKEQCSKTPQELEDMRRIPYVSAVGSLMYVMICTRPDICYAIGIVSRYQSNPWLDHWTTVKIILKYLKRTRTTCLCMQLWI