CuGenDBv2

Gene ID	Cmc08g0234231
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-galactosidase
Genome location	CMiso1.1chr08:31034266..31034835
RNA-Seq Expression	Cmc08g0234231
Synteny	Cmc08g0234231
Gene Ontology terms	GO:0006116 - NADH oxidation (biological process) GO:0015074 - DNA integration (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005777 - peroxisome (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003954 - NADH dehydrogenase activity (molecular function) GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]

5.1e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

KAA0031941.1 Beta-galactosidase [Cucumis melo var. makuwa]

5.1e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]

5.1e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

KAA0045977.1 Beta-galactosidase [Cucumis melo var. makuwa]

5.1e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]

5.1e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SM64 Beta-galactosidase

2.5e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

A0A5A7U8U2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.5e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

A0A5A7UGB2 Beta-galactosidase

2.5e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

A0A5A7V0Y9 Beta-galactosidase

2.5e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

A0A5A7VLQ7 Beta-galactosidase

2.5e-88

87.37

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Query:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA
        MS+ND+SD+AVLENMEEKNC DET VRIETSN+EAEQGHTRKLDEYDPSLDI I LRKGT+S  KHPICNY  YDNLSPQFRAFTA+LDSTII KNIYTA
Subjt:  MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNY--YDNLSPQFRAFTASLDSTIILKNIYTA

Query:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        L+CPEWKNAVMEEMKALEKNRTWEI  LPKGHK VGCKWVFSLKYKADGTL+RHK RLVAKGFTQTY IDYS+TFSPVAKLNTVRVLLS+
Subjt:  LKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.1e-16

46.51

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Query:  WKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSML
        W+ A+  E+ A + N TW I   P+   IV  +WVFS+KY   G   R+K RLVA+GFTQ Y IDY +TF+PVA++++ R +LS++
Subjt:  WKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSML

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.0e-16

43.3

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Query:  LKNIYTALKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        LK + +  +  +   A+ EEM++L+KN T+++  LPKG + + CKWVF LK   D  L R+K RLV KGF Q   ID+ + FSPV K+ ++R +LS+
Subjt:  LKNIYTALKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

P92520 Uncharacterized mitochondrial protein AtMg00820

2.6e-18

46.88

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Query:  KNIYTALKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        K++  ALK P W  A+ EE+ AL +N+TW +   P    I+GCKWVF  K  +DGTL+R K RLVAKGF Q   I + +T+SPV +  T+R +L++
Subjt:  KNIYTALKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

5.2e-19

47.83

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Query:  ALKCPEWKNAVMEEMKALEKNRTWEIYILPKGH-KIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        ALK   W+NA+  E+ A   N TW++   P  H  IVGC+W+F+ KY +DG+LNR+K RLVAKG+ Q   +DY++TFSPV K  ++R++L +
Subjt:  ALKCPEWKNAVMEEMKALEKNRTWEIYILPKGH-KIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.1e-16

38.53

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Query:  AFTASLDSTIILKNIYTALKCPEWKNAVMEEMKALEKNRTWEIY-ILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKL
        ++  SL +    +    A+K   W+ A+  E+ A   N TW++    P    IVGC+W+F+ K+ +DG+LNR+K RLVAKG+ Q   +DY++TFSPV K 
Subjt:  AFTASLDSTIILKNIYTALKCPEWKNAVMEEMKALEKNRTWEIY-ILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKL

Query:  NTVRVLLSM
         ++R++L +
Subjt:  NTVRVLLSM

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.3e-22

41.03

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Query:  YDNLSPQFRAFTASLDSTIILKNIYTALKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSK
        Y+ +SP + +F   +           A +   W  A+ +E+ A+E   TWEI  LP   K +GCKWV+ +KY +DGT+ R+K RLVAKG+TQ   ID+ +
Subjt:  YDNLSPQFRAFTASLDSTIILKNIYTALKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSK

Query:  TFSPVAKLNTVRVLLSM
        TFSPV KL +V+++L++
Subjt:  TFSPVAKLNTVRVLLSM

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

1.8e-19

46.88

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Query:  KNIYTALKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM
        K++  ALK P W  A+ EE+ AL +N+TW +   P    I+GCKWVF  K  +DGTL+R K RLVAKGF Q   I + +T+SPV +  T+R +L++
Subjt:  KNIYTALKCPEWKNAVMEEMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSM

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGTAAGAATGACAGGTCTGATGTTGCTGTTCTTGAAAATATGGAAGAAAAGAACTGTGGTGATGAGACTAATGTTAGAATAGAAACAAGTAACAATGAAGCTGAACA
GGGTCATACAAGGAAACTTGATGAGTATGATCCTTCTCTTGACATTCTCATTACTTTGAGAAAAGGTACCAAATCCTTCATTAAACATCCCATTTGCAACTATTATGATA
ATCTCTCTCCACAGTTTAGAGCATTTACAGCAAGCCTTGACTCTACCATAATACTGAAAAATATCTACACTGCTCTAAAGTGTCCTGAATGGAAAAATGCTGTTATGGAA
GAGATGAAGGCTCTTGAAAAGAATAGAACTTGGGAGATCTATATTCTACCCAAGGGACATAAAATTGTTGGATGCAAATGGGTGTTCTCTCTCAAATACAAAGCAGATGG
TACGCTTAATAGACACAAGACAAGGTTAGTTGCAAAGGGATTTACTCAGACCTATGTCATTGACTATTCAAAAACCTTTTCTCCAGTTGCTAAGTTGAATACTGTTAGAG
TCCTACTATCGATGCTATGA

mRNA sequence

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Protein sequence

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MSKNDRSDVAVLENMEEKNCGDETNVRIETSNNEAEQGHTRKLDEYDPSLDILITLRKGTKSFIKHPICNYYDNLSPQFRAFTASLDSTIILKNIYTALKCPEWKNAVME
EMKALEKNRTWEIYILPKGHKIVGCKWVFSLKYKADGTLNRHKTRLVAKGFTQTYVIDYSKTFSPVAKLNTVRVLLSML

Cmc08g0234231 (gene) of Melon (Charmono) v1.1 genome