CuGenDBv2

Gene ID	Cmc08g0234591
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr08:31271649..31272059
RNA-Seq Expression	Cmc08g0234591
Synteny	Cmc08g0234591
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004601 - peroxidase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059263.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.2e-53

74.24

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        MA+E+IEKTAFRTH+GHYEFLVMPF LTNAP+TFQ+LMNA+FKP+LRKFVLVFFDDIL+YSK+  +H+K+M  VL+ LRKHELYANKKKC+FA+ ++EYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIR
        GH+I   GV+VDPKKI S+A+WPKPTN+RE+R
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIR

KAA0062752.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.7e-54

73.53

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        MA+E+IEKTAFRTHEGHYEFLVMPFGLTNAP+TFQ+LMNAIFKP LRKFVLVFFDDIL+YS++ +EH+ H+E VL  LR+HELYAN+KKC FA+ ++EYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GH+I R GV VDP+KI +I +WP+PTNV+E RG LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

KAA0064684.1 tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa]

2.0e-54

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        M E++IEKTAFRTHEGHYEFLVMPFGLTNAP+TFQ+LMN IFKP LRKFVLVFFDDILIYSK+  +H++HM +VL+ LR+HELYANKKKCSFA+ +VEYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GHI+   GV+VDP+KI SI +WPKPTN++E+RG LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

TYJ96446.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

1.7e-53

74.26

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        M +E+IEKTAF+THEGHYEFLVMPFGLTNAP+TFQSLMN+IF+P+LR+FVLVFFDD LIYS++ ++HLKH+E V   LRKHEL+AN+KKCSF  +RVEYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GH+I   GV+VDPKKI +IA+WPKPTNVRE RG LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

TYK08827.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.7e-54

73.53

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        MA+E+IEKTAFRTHEGHYEFLVMPFGLTNAP+TFQ+LMNAIFKP LRKFVLVFFDDIL+YS++ +EH+ H+E VL  LR+HELYAN+KKC FA+ ++EYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GH+I R GV VDP+KI +I +WP+PTNV+E RG LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V3E4 Ty3/gypsy retrotransposon protein

3.7e-54

73.53

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        MA+E+IEKTAFRTHEGHYEFLVMPFGLTNAP+TFQ+LMNAIFKP LRKFVLVFFDDIL+YS++ +EH+ H+E VL  LR+HELYAN+KKC FA+ ++EYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GH+I R GV VDP+KI +I +WP+PTNV+E RG LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

A0A5A7VBR1 Tetratricopeptide repeat protein SKI3

9.8e-55

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        M E++IEKTAFRTHEGHYEFLVMPFGLTNAP+TFQ+LMN IFKP LRKFVLVFFDDILIYSK+  +H++HM +VL+ LR+HELYANKKKCSFA+ +VEYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GHI+   GV+VDP+KI SI +WPKPTN++E+RG LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

A0A5D3BC12 Transposon Tf2-6 polyprotein

8.3e-54

74.26

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        M +E+IEKTAF+THEGHYEFLVMPFGLTNAP+TFQSLMN+IF+P+LR+FVLVFFDD LIYS++ ++HLKH+E V   LRKHEL+AN+KKCSF  +RVEYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GH+I   GV+VDPKKI +IA+WPKPTNVRE RG LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

A0A5D3BWP0 Transposon Ty3-G Gag-Pol polyprotein

1.1e-53

74.24

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        MA+E+IEKTAFRTH+GHYEFLVMPF LTNAP+TFQ+LMNA+FKP+LRKFVLVFFDDIL+YSK+  +H+K+M  VL+ LRKHELYANKKKC+FA+ ++EYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIR
        GH+I   GV+VDPKKI S+A+WPKPTN+RE+R
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIR

A0A5D3CA10 Ty3/gypsy retrotransposon protein

3.7e-54

73.53

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        MA+E+IEKTAFRTHEGHYEFLVMPFGLTNAP+TFQ+LMNAIFKP LRKFVLVFFDDIL+YS++ +EH+ H+E VL  LR+HELYAN+KKC FA+ ++EYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GH+I R GV VDP+KI +I +WP+PTNV+E RG LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.8e-29

46.32

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        M  E + KTAF T  GHYE+L MPFGL NAP+TFQ  MN I +P L K  LV+ DDI+++S S +EHL+ +  V   L K  L     KC F K    +L
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GH++  +G+K +P+KI +I ++P PT  +EI+  LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.3e-24

38.24

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        +AE + EKT+F  + G YEF  +PFGL NA S FQ  ++ + +  + K   V+ DD++I+S++  +H++H++ VL  L    +  +++K  F K  VEYL
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        G I+ ++G K DP+K+ +I E+P+P  V ++R  LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.8e-30

49.26

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        M EE I KTAF T  GHYE+L MPFGL NAP+TFQ  MN I +P L K  LV+ DDI+I+S S  EHL  ++ V T L    L     KC F K    +L
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        GHI+  +G+K +P K+ +I  +P PT  +EIR  LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

5.2e-29

44.12

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        M E +I KTAF T  G YEFL +PFGL NAP+ FQ +++ I + H+ K   V+ DDI+++S+  + H K++  VL +L K  L  N +K  F  ++VE+L
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        G+I+  +G+K DPKK+ +I+E P PT+V+E++  LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

Q99315 Transposon Ty3-G Gag-Pol polyprotein

5.6e-23

43.38

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Query:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL
        M  ++  KTAF T  G YE+ VMPFGL NAPSTF   M   F+    +FV V+ DDILI+S+S EEH KH++ VL  L+   L   KKKC FA    E+L
Subjt:  MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYL

Query:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        G+ I    +     K ++I ++P P  V++ +  LG
Subjt:  GHIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

9.2e-13

43.66

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Query:  LKHMEEVLTALRKHELYANKKKCSFAKSRVEYLG--HIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG
        + H+  VL    +H+ YAN+KKC+F + ++ YLG  HII   GV  DP K+ ++  WP+P N  E+RG LG
Subjt:  LKHMEEVLTALRKHELYANKKKCSFAKSRVEYLG--HIIYRNGVKVDPKKISSIAEWPKPTNVREIRGSLG

Sequences

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CDS sequence

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ATGGCTGAAGAAGAAATAGAAAAGACTGCTTTTAGAACCCACGAAGGACATTATGAGTTCCTAGTTATGCCCTTTGGGTTAACAAATGCTCCGTCCACCTTTCAATCTTT
AATGAATGCAATTTTCAAACCGCACTTGAGAAAGTTTGTTTTGGTCTTCTTTGATGACATCTTGATTTACAGCAAGAGTAATGAAGAGCATTTGAAACACATGGAAGAAG
TCTTAACAGCCCTCAGGAAACATGAATTGTATGCTAATAAAAAGAAATGCAGTTTTGCCAAGTCACGGGTGGAGTATTTAGGGCATATTATATATAGAAATGGAGTCAAG
GTGGATCCAAAAAAAATTAGTTCTATTGCTGAATGGCCTAAACCAACTAATGTGAGGGAGATACGTGGTTCCTTGGGTTAA

mRNA sequence

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Protein sequence

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MAEEEIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNAIFKPHLRKFVLVFFDDILIYSKSNEEHLKHMEEVLTALRKHELYANKKKCSFAKSRVEYLGHIIYRNGVK
VDPKKISSIAEWPKPTNVREIRGSLG

Cmc08g0234591 (gene) of Melon (Charmono) v1.1 genome