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Cmc08g0236281 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0236281
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Tf2-9 polyprotein
Genome locationCMiso1.1chr08:32659954..32660481
RNA-Seq ExpressionCmc08g0236281
SyntenyCmc08g0236281
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004601 - peroxidase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036455.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.9e-7080.86Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        MV++DI KT FR HEGHYEFLVM FGLTNAPATFQALMNTIFKPYLRKFVLVFFDDIL+Y K+E++HV H+EKV  TLR HALYANK KCSFAQLKIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG
        GH+IS  GVEVDP+KI++IADWP PTN+R++ GFLGLTGYYRRFVQHY  IAA LTQLLKKG
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG

KAA0040958.1 peroxidase 64 [Cucumis melo var. makuwa]1.5e-7082.1Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        M E+DI KTAFR HEGHY+FLVM FGLTNAPATFQALMN +F+PYLRKFVLVFFDDILVY KNE+EH++H+ K++STLR H LYANK KCSFAQ KIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG
        GHIIS  GVEVDPEKIRSIADWP+PTNVR++ GFLGLTGYYRRFVQHY  IAAPLTQLLKKG
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG

KAA0042009.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.2e-7276.92Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        MVEQDI KT FRMHEGHYEFLVM FGLTNAPATFQ LMNTIFKPY RKFVLVFFDDILVY KNEK+HV+H+EKV+STLR HALY N+  CSFA+LKIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIISRGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGD-------SSGIKKLKKLLKS
        GHIIS GVEVD EK+RSIADWPVPTNVR+V GFLGL+GYYRRFVQ+Y  IAAPLTQLLKKG            +KLK+ + S
Subjt:  GHIISRGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGD-------SSGIKKLKKLLKS

KAA0047330.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.4e-6880.86Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        MV++DI KT FR HEGHYEFLVM FGLTNAPATFQALMNTIFKPYLRKFVLVFFDDIL+Y K E++HV H+EKV  TLR HAL+ANK KCSFAQ KIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG
        GH+IS  GVEVDP+KI++IADWP PTNVR+V GFLGLTGYYRRFVQHY  IAA LTQLLKKG
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG

TYK00031.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.9e-7080.86Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        MV++DI KT FR HEGHYEFLVM FGLTNAPATFQALMNTIFKPYLRKFVLVFFDDIL+Y K+E++HV H+EKV  TLR HALYANK KCSFAQLKIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG
        GH+IS  GVEVDP+KI++IADWP PTN+R++ GFLGLTGYYRRFVQHY  IAA LTQLLKKG
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG

TrEMBL top hitse value%identityAlignment
A0A5A7T4S3 Ty3/gypsy retrotransposon protein4.8e-7080.86Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        MV++DI KT FR HEGHYEFLVM FGLTNAPATFQALMNTIFKPYLRKFVLVFFDDIL+Y K+E++HV H+EKV  TLR HALYANK KCSFAQLKIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG
        GH+IS  GVEVDP+KI++IADWP PTN+R++ GFLGLTGYYRRFVQHY  IAA LTQLLKKG
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG

A0A5A7TKU3 Transposon Ty3-I Gag-Pol polyprotein3.0e-7276.92Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        MVEQDI KT FRMHEGHYEFLVM FGLTNAPATFQ LMNTIFKPY RKFVLVFFDDILVY KNEK+HV+H+EKV+STLR HALY N+  CSFA+LKIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIISRGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGD-------SSGIKKLKKLLKS
        GHIIS GVEVD EK+RSIADWPVPTNVR+V GFLGL+GYYRRFVQ+Y  IAAPLTQLLKKG            +KLK+ + S
Subjt:  GHIISRGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGD-------SSGIKKLKKLLKS

A0A5A7TVZ8 Transposon Ty3-G Gag-Pol polyprotein6.9e-6980.86Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        MV++DI KT FR HEGHYEFLVM FGLTNAPATFQALMNTIFKPYLRKFVLVFFDDIL+Y K E++HV H+EKV  TLR HAL+ANK KCSFAQ KIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG
        GH+IS  GVEVDP+KI++IADWP PTNVR+V GFLGLTGYYRRFVQHY  IAA LTQLLKKG
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG

A0A5D3BJN0 Ty3/gypsy retrotransposon protein4.8e-7080.86Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        MV++DI KT FR HEGHYEFLVM FGLTNAPATFQALMNTIFKPYLRKFVLVFFDDIL+Y K+E++HV H+EKV  TLR HALYANK KCSFAQLKIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG
        GH+IS  GVEVDP+KI++IADWP PTN+R++ GFLGLTGYYRRFVQHY  IAA LTQLLKKG
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG

A0A5D3D9X2 Peroxidase 647.4e-7182.1Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        M E+DI KTAFR HEGHY+FLVM FGLTNAPATFQALMN +F+PYLRKFVLVFFDDILVY KNE+EH++H+ K++STLR H LYANK KCSFAQ KIEYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG
        GHIIS  GVEVDPEKIRSIADWP+PTNVR++ GFLGLTGYYRRFVQHY  IAAPLTQLLKKG
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.66.9e-3441.53Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        M  + + KTAF    GHYE+L M FGL NAPATFQ  MN I +P L K  LV+ DDI+V+  +  EH+  +  V   L    L    +KC F + +  +L
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG---------DSSGIKKLKKLL
        GH+++  G++ +PEKI +I  +P+PT  +++  FLGLTGYYR+F+ ++  IA P+T+ LKK            S  KKLK L+
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKG---------DSSGIKKLKKLL

P0CT41 Transposon Tf2-12 polyprotein3.1e-2638.22Show/hide
Query:  DIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYLG-HI
        D HK AFR   G +E+LVM +G++ APA FQ  +NTI        V+ + DDIL++ K+E EHV H++ V+  L++  L  N+ KC F Q +++++G HI
Subjt:  DIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYLG-HI

Query:  ISRGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKK
          +G     E I  +  W  P N +++  FLG   Y R+F+     +  PL  LLKK
Subjt:  ISRGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.1e-2836.05Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        + E D  KT+F ++ G YEF  + FGL NA + FQ  ++ + +  + K   V+ DD++++ +NE +HV H++ V+  L    +  ++ K  F +  +EYL
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIISR-GVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGDSSGIKKLKK
        G I+S+ G + DPEK+++I ++P P  V +V  FLGL  YYR F++ +  IA P+T +LK  + S  K + K
Subjt:  GHIISR-GVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGDSSGIKKLKK

P20825 Retrovirus-related Pol polyprotein from transposon 2971.7e-3542.69Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        M E+ I KTAF    GHYE+L M FGL NAPATFQ  MN I +P L K  LV+ DDI+++  +  EH++ ++ V + L    L    +KC F + +  +L
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGDSSGIKKLK
        GHI++  G++ +P K+++I  +P+PT  +++  FLGLTGYYR+F+ +Y  IA P+T  LKK      +KL+
Subjt:  GHIIS-RGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGDSSGIKKLK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.2e-3140.62Show/hide
Query:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL
        M E DI KTAF    G YEFL + FGL NAPA FQ +++ I + ++ K   V+ DDI+V+ ++   H  ++  V+++L    L  N  K  F   ++E+L
Subjt:  MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYL

Query:  GHIISR-GVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLK
        G+I++  G++ DP+K+R+I++ P PT+V+++  FLG+T YYR+F+Q Y  +A PLT L +
Subjt:  GHIISR-GVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLK

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.7e-2248.96Show/hide
Query:  VSHMEKVVSTLRHHALYANKNKCSFAQLKIEYLGH---IISRGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKK
        ++H+  V+     H  YAN+ KC+F Q +I YLGH   I   GV  DP K+ ++  WP P N  ++ GFLGLTGYYRRFV++Y  I  PLT+LLKK
Subjt:  VSHMEKVVSTLRHHALYANKNKCSFAQLKIEYLGH---IISRGVEVDPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGCAAGATATTCACAAGACAGCTTTTAGAATGCATGAAGGACATTATGAGTTTCTTGTCATGCTCTTTGGATTGACAAATGCGCCGGCCACTTTTCAAGCTTT
GATGAATACTATTTTCAAACCTTATTTGAGAAAGTTTGTTCTAGTATTCTTTGATGACATATTGGTTTACGGCAAGAATGAGAAGGAGCATGTGAGTCATATGGAAAAGG
TTGTCTCAACTTTGAGGCATCATGCATTATATGCTAATAAAAATAAATGTAGCTTTGCTCAGCTGAAAATTGAATATTTGGGGCATATAATATCTAGAGGAGTGGAAGTT
GATCCGGAAAAAATCAGATCCATAGCTGACTGGCCGGTACCGACGAATGTTAGACAAGTTTGTGGATTCCTCGGTTTAACCGGATATTACAGAAGATTTGTGCAGCACTA
CGAGTTCATAGCAGCCCCATTAACTCAGCTACTTAAAAAGGGGGATTCAAGTGGAATAAAGAAGTTGAAGAAGCTTTTGAAAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGCAAGATATTCACAAGACAGCTTTTAGAATGCATGAAGGACATTATGAGTTTCTTGTCATGCTCTTTGGATTGACAAATGCGCCGGCCACTTTTCAAGCTTT
GATGAATACTATTTTCAAACCTTATTTGAGAAAGTTTGTTCTAGTATTCTTTGATGACATATTGGTTTACGGCAAGAATGAGAAGGAGCATGTGAGTCATATGGAAAAGG
TTGTCTCAACTTTGAGGCATCATGCATTATATGCTAATAAAAATAAATGTAGCTTTGCTCAGCTGAAAATTGAATATTTGGGGCATATAATATCTAGAGGAGTGGAAGTT
GATCCGGAAAAAATCAGATCCATAGCTGACTGGCCGGTACCGACGAATGTTAGACAAGTTTGTGGATTCCTCGGTTTAACCGGATATTACAGAAGATTTGTGCAGCACTA
CGAGTTCATAGCAGCCCCATTAACTCAGCTACTTAAAAAGGGGGATTCAAGTGGAATAAAGAAGTTGAAGAAGCTTTTGAAAAGTTAA
Protein sequenceShow/hide protein sequence
MVEQDIHKTAFRMHEGHYEFLVMLFGLTNAPATFQALMNTIFKPYLRKFVLVFFDDILVYGKNEKEHVSHMEKVVSTLRHHALYANKNKCSFAQLKIEYLGHIISRGVEV
DPEKIRSIADWPVPTNVRQVCGFLGLTGYYRRFVQHYEFIAAPLTQLLKKGDSSGIKKLKKLLKS