; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc08g0236391 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc08g0236391
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
Genome locationCMiso1.1chr08:32744555..32745388
RNA-Seq ExpressionCmc08g0236391
SyntenyCmc08g0236391
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]1.6e-12783.76Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQIV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQD++SGRTIGTARHSRGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI++K EV SIFQNFYHTI+TQFH K
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]1.6e-12783.76Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQIV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQD++SGRTIGTARHSRGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI++K EV SIFQNFYHTI+TQFH K
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

KAA0066242.1 Beta-galactosidase [Cucumis melo var. makuwa]4.0e-13488.56Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M Q   LISVDGTN WILDS ATDHLTGFSEHFVTYTP A NEKIRI +GSLA +AGKGQI+L+DGFSLQ VLHVPKLSYNLLSISKITRELH KATFLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQ+LNSGRTIGTARHSRGLYILNDDTSGSSI TTSLLSSY STSEHD+MLWHFRLGHPNFTYMKYLFP+LFLKIDVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ FTLIH+DVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLIT+K EVS+IFQNFYHTIETQFHKK
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]1.6e-12783.76Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQIV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQD++SGRTIGTARHSRGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI++K EV SIFQNFYHTI+TQFH K
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]1.6e-12783.76Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQIV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQD++SGRTIGTARHSRGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI++K EV SIFQNFYHTI+TQFH K
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

TrEMBL top hitse value%identityAlignment
A0A5A7SM64 Beta-galactosidase7.9e-12883.76Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQIV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQD++SGRTIGTARHSRGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI++K EV SIFQNFYHTI+TQFH K
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

A0A5A7VD20 Beta-galactosidase2.0e-13488.56Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M Q   LISVDGTN WILDS ATDHLTGFSEHFVTYTP A NEKIRI +GSLA +AGKGQI+L+DGFSLQ VLHVPKLSYNLLSISKITRELH KATFLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQ+LNSGRTIGTARHSRGLYILNDDTSGSSI TTSLLSSY STSEHD+MLWHFRLGHPNFTYMKYLFP+LFLKIDVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ FTLIH+DVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLIT+K EVS+IFQNFYHTIETQFHKK
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

A0A5A7VLQ7 Beta-galactosidase7.9e-12883.76Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQIV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQD++SGRTIGTARHSRGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI++K EV SIFQNFYHTI+TQFH K
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

A0A5D3BJK7 Beta-galactosidase7.9e-12883.76Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQIV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQD++SGRTIGTARHSRGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI++K EV SIFQNFYHTI+TQFH K
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

A0A5D3C4T4 Beta-galactosidase7.9e-12883.76Show/hide
Query:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQIV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS
        ESV FQD++SGRTIGTARHSRGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DVS LSCDVCI+AKQ+RVSFPS
Subjt:  ESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPS

Query:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        QPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI++K EV SIFQNFYHTI+TQFH K
Subjt:  QPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.6e-1126.37Show/hide
Query:  WILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDG---FSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGR
        ++LDSGA+DHL      +          KI +A       A K  IV        +L+ VL   + + NL+S+ ++              +  +   SG 
Subjt:  WILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDG---FSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGR

Query:  TIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEH--DFMLWHFRLGHPNFTYM-----KYLF--PYLFLKIDVSLLSCDVCIQAKQYRVSFPSQPY
        TI       GL ++ +    +++   +   +Y   ++H  +F LWH R GH +   +     K +F    L   +++S   C+ C+  KQ R+ F     
Subjt:  TIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEH--DFMLWHFRLGHPNFTYM-----KYLF--PYLFLKIDVSLLSCDVCIQAKQYRVSFPSQPY

Query:  KP--TQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKKNCY
        K    +   ++H+DV GP    T   K +FV F+D  T     YLI  K +V S+FQ+F    E  F+ K  Y
Subjt:  KP--TQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKKNCY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-1927.38Show/hide
Query:  WILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFS----LQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSG
        W++D+ A+ H T   + F  Y  +     +++ N S + +AG G I +         L+ V HVP L  NL+S   + R+ + ++ F  +      L  G
Subjt:  WILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFS----LQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSG

Query:  RTIGTARHSRG-LYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI--DVSLLSCDVCIQAKQYRVSFPSQPYKPTQS
          +     +RG LY  N +     +          +  E    LWH R+GH +   ++ L     +      ++  CD C+  KQ+RVSF +   +    
Subjt:  RTIGTARHSRG-LYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI--DVSLLSCDVCIQAKQYRVSFPSQPYKPTQS

Query:  FTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
          L+++DV GP ++ +  G ++FVTFIDD +R  WVY++  K +V  +FQ F+  +E +  +K
Subjt:  FTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.3e-2327.92Show/hide
Query:  TNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFD---GFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLN
        +N W+LDSGAT H+T    +   + P    + + +A+GS   ++  G   L       +L  +L+VP +  NL+S+ ++         F P S   +DLN
Subjt:  TNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFD---GFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLN

Query:  SGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI---DVSLLSCDVCIQAKQYRVSFPSQPYKPT
        +G  +   +    LY    +   +S    SL +S  S + H    WH RLGHP  + +  +     L +       LSC  C+  K  +V F       T
Subjt:  SGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI---DVSLLSCDVCIQAKQYRVSFPSQPYKPT

Query:  QSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
        +    I++DVW  S + +    R++V F+D  TR TW+Y +  K +V   F  F + +E +F  +
Subjt:  QSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.9e-2428.79Show/hide
Query:  NPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVL---FDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNS
        N W+LDSGAT H+T    +   + P    + + IA+GS   +   G   L        L KVL+VP +  NL+S+ ++         F P S   +DLN+
Subjt:  NPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVL---FDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNS

Query:  GRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI---DVSLLSCDVCIQAKQYRVSFPSQPYKPTQ
        G  +   +    LY    +   +S    S+ +S  S + H    WH RLGHP+   +  +     L +      LLSC  C   K ++V F +     ++
Subjt:  GRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI---DVSLLSCDVCIQAKQYRVSFPSQPYKPTQ

Query:  SFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK
            I++DVW  S + +    R++V F+D  TR TW+Y +  K +V   F  F   +E +F  +
Subjt:  SFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGACGAATCCCTGGATTTTGGACTCGGGGGCCACAGATCACTTGACAGGTTTCTCGGAGCATTTTGTCACT
TATACACCCTCTGCCAGTAATGAGAAAATCCGGATAGCCAATGGCTCTTTAGCTTCGGTTGCTGGAAAAGGACAAATAGTCCTCTTTGACGGTTTCTCCCTCCAG
AAGGTTTTGCATGTGCCTAAGCTTTCTTACAATCTGTTATCTATCAGTAAGATCACCCGTGAGCTACACTGTAAAGCTACTTTCTTACCTGAGTCTGTTTGCTTT
CAGGACTTGAATTCAGGAAGGACGATTGGCACTGCCCGGCATAGTAGGGGACTTTACATCCTTAATGATGATACCTCCGGTAGTAGTATCTTTACGACTAGTTTA
CTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTGTGGCATTTTCGGTTAGGTCACCCGAACTTTACGTATATGAAATATTTGTTTCCCTATCTCTTT
CTTAAAATAGATGTCTCCTTGTTATCTTGTGATGTGTGCATTCAGGCAAAACAATATCGTGTTTCTTTTCCCTCACAACCATATAAACCCACACAATCGTTTACC
CTTATCCATAATGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTAC
CTTATCACCAATAAATTTGAGGTTTCTTCTATTTTTCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAAATTGCTATTCTTCGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGACGAATCCCTGGATTTTGGACTCGGGGGCCACAGATCACTTGACAGGTTTCTCGGAGCATTTTGTCACT
TATACACCCTCTGCCAGTAATGAGAAAATCCGGATAGCCAATGGCTCTTTAGCTTCGGTTGCTGGAAAAGGACAAATAGTCCTCTTTGACGGTTTCTCCCTCCAG
AAGGTTTTGCATGTGCCTAAGCTTTCTTACAATCTGTTATCTATCAGTAAGATCACCCGTGAGCTACACTGTAAAGCTACTTTCTTACCTGAGTCTGTTTGCTTT
CAGGACTTGAATTCAGGAAGGACGATTGGCACTGCCCGGCATAGTAGGGGACTTTACATCCTTAATGATGATACCTCCGGTAGTAGTATCTTTACGACTAGTTTA
CTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTGTGGCATTTTCGGTTAGGTCACCCGAACTTTACGTATATGAAATATTTGTTTCCCTATCTCTTT
CTTAAAATAGATGTCTCCTTGTTATCTTGTGATGTGTGCATTCAGGCAAAACAATATCGTGTTTCTTTTCCCTCACAACCATATAAACCCACACAATCGTTTACC
CTTATCCATAATGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTAC
CTTATCACCAATAAATTTGAGGTTTCTTCTATTTTTCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAAATTGCTATTCTTCGGAGTGA
Protein sequenceShow/hide protein sequence
MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCF
QDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPSQPYKPTQSFT
LIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKKNCYSSE