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Cmc09g0240591 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0240591
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:2663993..2667832
RNA-Seq ExpressionCmc09g0240591
SyntenyCmc09g0240591
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041343.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.2e-1582.35Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS
        MNSKGEARKCFLC+K+GHFKKHCPLN S EASSSKH  +TS+ NVTDGYDS
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS

KAA0050828.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.0e-1586.54Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDSG
        MNSKGEARKCFLCHK GHFKK+ PLNKSKEASSSKHV ETS+ANV DGY+SG
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDSG

KAA0065973.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-1688.24Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS
        MNSKGE RKCFLCHK+GHFKKHC LNKSKEASSSKHV ETS+ANV DGYDS
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS

KAE8649328.1 hypothetical protein Csa_014533 [Cucumis sativus]4.6e-1584.31Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS
        MNSKGEARKCFLCHKE HFKKHC LNKSKEASSSKH +ETS  NV D YDS
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS

TYK26800.1 copia retroelement pol polyprotein-like [Cucumis melo var. makuwa]4.2e-1684.31Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS
        MNSKGEARKCFLC+KEGHFKKHCPLN S EASSSKH  +TS+ NVTDGYDS
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS

TrEMBL top hitse value%identityAlignment
A0A5A7TDW0 Putative mitochondrial protein5.9e-1682.35Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS
        MNSKGEARKCFLC+K+GHFKKHCPLN S EASSSKH  +TS+ NVTDGYDS
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS

A0A5A7U6F0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-1586.54Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDSG
        MNSKGEARKCFLCHK GHFKK+ PLNKSKEASSSKHV ETS+ANV DGY+SG
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDSG

A0A5A7VCT5 Retrovirus-related Pol polyprotein from transposon TNT 1-945.3e-1788.24Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS
        MNSKGE RKCFLCHK+GHFKKHC LNKSKEASSSKHV ETS+ANV DGYDS
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS

A0A5D3CDU9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1484.62Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDSG
        MNSKGEARKCFLCHK GHFKK+ PLNK KEASSSKHV ETS+ANV DGY+SG
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDSG

A0A5D3DU26 Copia retroelement pol polyprotein-like2.0e-1684.31Show/hide
Query:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS
        MNSKGEARKCFLC+KEGHFKKHCPLN S EASSSKH  +TS+ NVTDGYDS
Subjt:  MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCAAAGGGGGAAGCTAGAAAGTGCTTCCTTTGTCATAAAGAAGGACACTTTAAGAAACATTGCCCTTTGAATAAGAGCAAGGAAGCATCAAGTAGCAAGCATGT
AATTGAGACTAGTAAAGCGAATGTTACTGATGGGTATGATTCAGGGTAG
mRNA sequenceShow/hide mRNA sequence
TTGAGAGGTTAAGGAAGCTATTAAATATGGTCGGGACTCATTGACCATGAGTATAGTGTTGGATGCCTTGAAGAGACTAGAAATCTTGAAATTAAGAAAGAAAGCAAGGA
TGGAGAGTTACTCATGGCTAGAGGAAGAAGTGACAAAAAGAGCTAGAAAGGAAAAAAGAAGAGTTCCAAGATGAATTCAAAGGGGGAAGCTAGAAAGTGCTTCCTTTGTC
ATAAAGAAGGACACTTTAAGAAACATTGCCCTTTGAATAAGAGCAAGGAAGCATCAAGTAGCAAGCATGTAATTGAGACTAGTAAAGCGAATGTTACTGATGGGTATGAT
TCAGGGTAGGATTCAGTAGAGGCCTTGATGGTGTCTCACAGGGATATACAAGATGCTTGGATCATGGATTTAGGGTGCACATTTCACATGACTCCTAATCGGGATTTTCT
GATTAACTTTCAGAAAAGTGATGGAGGAAAAAGTCTTATTGGGTAATAATAGTACCTGTGATGTAAAGAAAACTGGTTCAGTTCAAATTGCAACACATGACAGGATGATC
AGAAAGCTTACTAATGTGAGGAAGCAAGGAGCTTAACAAGGCTAGAGATAAAGCCCAACAATTATACAAAAGCATTAATGTTTAAAGCAATGGAGTCAGCGCTATAATTA
AAAAAAAAGCTTAGATCTATTGCTCACAGCAAGAGCAAGTATATCATCCCAAACTTCAACAACGCCTTTTTTTGAGTCTTTGAAAATCATGTTGTTTCTTTCAAGCCAAA
TCATCCATAAAGTAACCCCAATGGCGTTGAAGGTGATAGCCCCAATCCTGTTGTTTTCATGGATGTTTAGATGAGTTATGTGTGTTGTGTGCTTATTTGTGTTTGTTTAG
GGTTAGCTCTTCTGAAATAGAAGAATGTATACGTTAAGGATTTGAAGTTTTAGAACTTTATTCCATGCATGTTATTTGAACTTTATGTTACCTTCGGTAATGGAGTCAAA
ATCCCACATCGGTTAGATAAAAGGACGATCTTGGCCATATAAGTGAGGAAAACTGTCCTCATTGGTACAAGACCTTTTGGGATGGTACCAAAAGTA
Protein sequenceShow/hide protein sequence
MNSKGEARKCFLCHKEGHFKKHCPLNKSKEASSSKHVIETSKANVTDGYDSG