CuGenDBv2

Gene ID	Cmc09g0240691
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr09:2762989..2765208
RNA-Seq Expression	Cmc09g0240691
Synteny	Cmc09g0240691
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR036397 - Ribonuclease H superfamily IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033083.1 copia protein [Cucumis melo var. makuwa]

0.0e+00

83.27

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFL FPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALAAQNNWKIFQMDVKS FLNGYLEEEVYLEQPPGY VKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR+ILEKFNMMNSK VA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEY+AAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVFFFFFKKNMFKGGC
        TEDQIADIFTKPL VNVFNNLRTLLGV  FF  KNMFKGGC
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVFFFFFKKNMFKGGC

KAA0062149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

0.0e+00

83.79

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSP RSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFLFFPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALA QNNWKIFQMDVKS FLNGYLEEEVYLEQPPGYCVKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEYVAAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVF
        TEDQIADIFTKPL VNVFNNLRTLLGVF
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVF

TYK06895.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

0.0e+00

84.07

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFLFFPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALAAQNNWKIFQMDVKS FLNGYLEEEVYLEQPPGY VKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEYVAAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVF
        TEDQIADIFTKPL VNVFNNLRTLLGVF
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVF

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

0.0e+00

84.07

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFLFFPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALAAQNNWKIFQMDVKS FLNGYLEEEVYLEQPPGY VKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEYVAAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVF
        TEDQIADIFTKPL VNVFNNLRTLLGVF
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVF

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

0.0e+00

84.07

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFLFFPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALAAQNNWKIFQMDVKS FLNGYLEEEVYLEQPPGY VKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEYVAAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVF
        TEDQIADIFTKPL VNVFNNLRTLLGVF
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRM0 Copia protein

0.0e+00

83.27

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFL FPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALAAQNNWKIFQMDVKS FLNGYLEEEVYLEQPPGY VKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR+ILEKFNMMNSK VA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEY+AAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVFFFFFKKNMFKGGC
        TEDQIADIFTKPL VNVFNNLRTLLGV  FF  KNMFKGGC
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVFFFFFKKNMFKGGC

A0A5A7V8Y7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

83.79

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Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSP RSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFLFFPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALA QNNWKIFQMDVKS FLNGYLEEEVYLEQPPGYCVKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLK AMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEYVAAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVF
        TEDQIADIFTKPL VNVFNNLRTLLGVF
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVF

A0A5D3C639 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

84.07

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Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFLFFPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALAAQNNWKIFQMDVKS FLNGYLEEEVYLEQPPGY VKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEYVAAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVF
        TEDQIADIFTKPL VNVFNNLRTLLGVF
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVF

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

84.07

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Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFLFFPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALAAQNNWKIFQMDVKS FLNGYLEEEVYLEQPPGY VKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEYVAAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVF
        TEDQIADIFTKPL VNVFNNLRTLLGVF
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVF

A0A5D3D497 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

84.07

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Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNM RSMLK KKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAW GRKPSI HLRVFGCMAYAHIPDQKRSKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET
        KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE SWNWNDEPEDYKFLFFPD+RDEPSDIASPPTS IT QQSTSSSS+SSSE PRGMRSL+DIYDET
Subjt:  KYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDET

Query:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE
        EEL+QS                                                         VKWVFKIKRNEKGEVE+YK RLVAKGYSQRKGIDYDE
Subjt:  EELNQS---------------------------------------------------------VKWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDE

Query:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
        VFAPVARL+TIRLLIALAAQNNWKIFQMDVKS FLNGYLEEEVYLEQPPGY VKGQE KVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY
Subjt:  VFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLY

Query:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE
        IKVNGHGDILVVCLYVD LIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA PIETGTKLSKHE
Subjt:  IKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHE

Query:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF
        EGDDVDPSYFKSL  +G   Y            G+   +        LKVAKRILRYLRGTLDY LFYSSSKEFKLEGYCDS WAGDTNDRKSTSGYVFF
Subjt:  EGDDVDPSYFKSLLWIGESIY------------GISYNY-------SLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFF

Query:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
        IG+TAFTWSSKKQPIVTLSTC+AEYVAAASCVCHAVWLRNLLKT GILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK
Subjt:  IGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVK

Query:  TEDQIADIFTKPLNVNVFNNLRTLLGVF
        TEDQIADIFTKPL VNVFNNLRTLLGVF
Subjt:  TEDQIADIFTKPLNVNVFNNLRTLLGVF

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.3e-101

31.81

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Query:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSL--WNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDK
        +TVP TPQ NGV ER  RTI    R+M+   K+ K FW +AV  A YL NR P+R+L   +KTP + W  +KP + HLRVFG   Y HI + K+ K DDK
Subjt:  MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSL--WNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDK

Query:  SEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDE-----------ETSW-------------------------NWNDEPEDYKFL------------
        S K +FVGY+ +  G+KL++ V +K IV+RDVV DE           ET +                         N + E ++ +FL            
Subjt:  SEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDE-----------ETSW-------------------------NWNDEPEDYKFL------------

Query:  ---------FFPDDRDEPSDIASPPTSSIT----------------LQQSTSSSSSSSSEEPRGMRSLRDI-----------------------------
                  FP++  E  +I     S  +                L +S  S + + S E      L++I                             
Subjt:  ---------FFPDDRDEPSDIASPPTSSIT----------------LQQSTSSSSSSSSEEPRGMRSLRDI-----------------------------

Query:  YDETEELNQSV---------------------------------------------------------KWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGI
         +E   LN+ V                                                         +WVF +K NE G   +YK RLVA+G++Q+  I
Subjt:  YDETEELNQSV---------------------------------------------------------KWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGI

Query:  DYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYE
        DY+E FAPVAR+ + R +++L  Q N K+ QMDVK+ FLNG L+EE+Y+  P G  +      V KL KA+YGLKQA R W     +   +  ++    +
Subjt:  DYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYE

Query:  HSLYIKVNGH-GDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTK
          +YI   G+  + + V LYVD ++      +   + K+ + ++F MTD+  + +++GI ++  E+ I++SQ  Y ++IL KFNM N   V+ P+ +   
Subjt:  HSLYIKVNGH-GDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTK

Query:  ---LSKHEEGDDVDPSYFKSLLWIG-------ESIYGISYNYSLK-------VAKRILRYLRGTLDYELFYSSSKEF--KLEGYCDSGWAGDTNDRKSTS
           L+  E+ +    S    L++I         +   I   YS K         KR+LRYL+GT+D +L +  +  F  K+ GY DS WAG   DRKST+
Subjt:  ---LSKHEEGDDVDPSYFKSLLWIG-------ESIYGISYNYSLK-------VAKRILRYLRGTLDYELFYSSSKEF--KLEGYCDSGWAGDTNDRKSTS

Query:  GYVF-FIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV
        GY+F         W++K+Q  V  S+ +AEY+A    V  A+WL+ LL +  I  ++P  I+ DN+  I++A NP  H R+KHID ++HF R+ +    +
Subjt:  GYVF-FIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV

Query:  QVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGV
         +EY+ TE+Q+ADIFTKPL    F  LR  LG+
Subjt:  QVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.1e-119

34.21

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Query:  TVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEK
        TVP TPQ NGV ER NRTI+   RSML+  K+PK FW +AV+ A YL NRSP+  L  + P++ W  ++ S  HL+VFGC A+AH+P ++R+KLDDKS  
Subjt:  TVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEK

Query:  YVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQ---------------------------
         +F+GY     GY+L++PV KK I SRDVVF E       D  E  K    P+    PS   +P ++  T  +                           
Subjt:  YVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQ---------------------------

Query:  -------------------------STSSSSSSSSEEPRGMRS----------LRDIYDETEELNQS----------------VKWVFKIKRNEKGEVEK
                                 ST     S   EP  ++           ++ + +E E L ++                 KWVFK+K++   ++ +
Subjt:  -------------------------STSSSSSSSSEEPRGMRS----------LRDIYDETEELNQS----------------VKWVFKIKRNEKGEVEK

Query:  YKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSR
        YK RLV KG+ Q+KGID+DE+F+PV ++ +IR +++LAA  + ++ Q+DVK+ FL+G LEEE+Y+EQP G+ V G+++ V KL K+LYGLKQAPR W  +
Subjt:  YKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSR

Query:  INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEV--KQSEEGIFISQERYTREILEKF
         + +     YL+   +  +Y K     + +++ LYVD ++  G    +   LK  +++ F+M D+G     LG+++  +++   +++SQE+Y   +LE+F
Subjt:  INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEV--KQSEEGIFISQERYTREILEKF

Query:  NMMNSKPVAIPIETGTKLSK-------HEEGDDVDPSYFKSLLWIGESIYGI-----SYNYSLKVAKR---------------ILRYLRGTLDYELFYSS
        NM N+KPV+ P+    KLSK        E+G+     Y  +   +G  +Y +        +++ V  R               ILRYLRGT    L +  
Subjt:  NMMNSKPVAIPIETGTKLSK-------HEEGDDVDPSYFKSLLWIGESIYGI-----SYNYSLKVAKR---------------ILRYLRGTLDYELFYSS

Query:  SKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPV
        S    L+GY D+  AGD ++RKS++GY+F     A +W SK Q  V LST +AEY+AA       +WL+  L+  G+ Q +  V++ D++S I L+KN +
Subjt:  SKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPV

Query:  FHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGV
        +H R+KHID R+H+IR+ +  + ++V  + T +  AD+ TK +  N F   + L+G+
Subjt:  FHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGV

P92519 Uncharacterized mitochondrial protein AtMg00810

9.7e-28

30.53

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Query:  LVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHEEGDDVDPSY
        + + LYVD ++ TG+  ++   L   ++  F M D+G + Y+LGI++K    G+F+SQ +Y  +IL    M++ KP++ P+      S        DPS 
Subjt:  LVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHEEGDDVDPSY

Query:  FKSLL----WIGESIYGISYNYSL-------------KVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSK
        F+S++    ++  +   ISY  ++              + KR+LRY++GT+ + L+   + +  ++ +CDS WAG T+ R+ST+G+  F+G    +WS+K
Subjt:  FKSLL----WIGESIYGISYNYSL-------------KVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSK

Query:  KQPIVTLSTCQAEYVAAASCVCHAVW
        +QP V+ S+ + EY A A       W
Subjt:  KQPIVTLSTCQAEYVAAASCVCHAVW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

8.0e-99

30.11

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Query:  PFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEKYV
        P TP+ NG+ ERK+R I+    ++L +  +PK +W  A   AVYL NR PT  L  ++P Q   G  P+ D LRVFGC  Y  +    + KLDDKS + V
Subjt:  PFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEKYV

Query:  FVGYDASSKGYKLYNPVTKKTIVSRDVVFDE--------------------ETSWNWNDE---PEDYKFLFFPDDRDEPSDIASPP--------------
        F+GY  +   Y   +  T +  +SR V FDE                    E+S  W+     P     L  P   D P   A+PP              
Subjt:  FVGYDASSKGYKLYNPVTKKTIVSRDVVFDE--------------------ETSWNWNDE---PEDYKFLFFPDDRDEPSDIASPP--------------

Query:  ------------------------------------------------------------------TSSITLQQSTSSSSSSSSEEPRGM----------
                                                                          +SS +   +TS+SSSS+S  P  +          
Subjt:  ------------------------------------------------------------------TSSITLQQSTSSSSSSSSEEPRGM----------

Query:  -------------------------------------------RSLRDIYDET------EELNQSV--------------------KWVFKIKRNEKGEV
                                                    +++ + DE        E+N  +                    +W+F  K N  G +
Subjt:  -------------------------------------------RSLRDIYDET------EELNQSV--------------------KWVFKIKRNEKGEV

Query:  EKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWN
         +YK RLVAKGY+QR G+DY E F+PV +  +IR+++ +A   +W I Q+DV + FL G L ++VY+ QPPG+  K +   V KL+KALYGLKQAPR W 
Subjt:  EKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWN

Query:  SRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKF
          +  Y L  G++    + SL++   G   I+ + +YVD ++ TGN  ++  +    ++Q F + D   + Y+LGIE K+   G+ +SQ RY  ++L + 
Subjt:  SRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKF

Query:  NMMNSKPVAIPIETGTKLSKHEEGDDVDPSYFK----SLLWIGESIYGISYNYS-------------LKVAKRILRYLRGTLDYELFYSSSKEFKLEGYC
        NM+ +KPV  P+    KLS +      DP+ ++    SL ++  +   ISY  +             L+  KRILRYL GT ++ +F        L  Y 
Subjt:  NMMNSKPVAIPIETGTKLSKHEEGDDVDPSYFK----SLLWIGESIYGISYNYS-------------LKVAKRILRYLRGTLDYELFYSSSKEFKLEGYC

Query:  DSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDT
        D+ WAGD +D  ST+GY+ ++G    +WSSKKQ  V  S+ +AEY + A+      W+ +LL   GI    P VI+ DN     L  NPVFH R KHI  
Subjt:  DSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDT

Query:  RFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGV
         +HFIR+ +    ++V +V T DQ+AD  TKPL+   F N  + +GV
Subjt:  RFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

2.8e-99

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Query:  PFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEKYV
        P TP+ NG+ ERK+R I+ M  ++L +  +PK +W  A   AVYL NR PT  L  ++P Q   G+ P+ + L+VFGC  Y  +    R KL+DKS++  
Subjt:  PFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEKYV

Query:  FVGYDASSKGYKLYNPVTKKTIVSRDVVFDE--------------------ETSWNW-------------------------------------------
        F+GY  +   Y   +  T +   SR V FDE                    +++ NW                                           
Subjt:  FVGYDASSKGYKLYNPVTKKTIVSRDVVFDE--------------------ETSWNW-------------------------------------------

Query:  ------------NDEP---------------------EDYKFLFFPD---------DRDEP---SDIASP--PTSSITLQQSTSSSSSSSSEEP------
                    + EP                      +   L  P+         +++ P   S I+SP  PT S ++ +  S SSSS+S  P      
Subjt:  ------------NDEP---------------------EDYKFLFFPD---------DRDEP---SDIASP--PTSSITLQQSTSSSSSSSSEEP------

Query:  -----------------------RGMRSLRDIYDET--------------------------EELNQSV--------------------KWVFKIKRNEK
                                G+R     Y                              E+N  +                    +W+F  K N  
Subjt:  -----------------------RGMRSLRDIYDET--------------------------EELNQSV--------------------KWVFKIKRNEK

Query:  GEVEKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPR
        G + +YK RLVAKGY+QR G+DY E F+PV +  +IR+++ +A   +W I Q+DV + FL G L +EVY+ QPPG+  K +   V +L+KA+YGLKQAPR
Subjt:  GEVEKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPR

Query:  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREIL
         W   +  Y L  G++    + SL++   G   I+ + +YVD ++ TGN   + +    A++Q F + +   + Y+LGIE K+  +G+ +SQ RYT ++L
Subjt:  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREIL

Query:  EKFNMMNSKPVAIPIETGTKLSKHEEGDDVDPSYFK----SLLWIGESIYGISYNYS-------------LKVAKRILRYLRGTLDYELFYSSSKEFKLE
         + NM+ +KPVA P+ T  KL+ H      DP+ ++    SL ++  +   +SY  +                 KR+LRYL GT D+ +F        L 
Subjt:  EKFNMMNSKPVAIPIETGTKLSKHEEGDDVDPSYFK----SLLWIGESIYGISYNYS-------------LKVAKRILRYLRGTLDYELFYSSSKEFKLE

Query:  GYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKH
         Y D+ WAGDT+D  ST+GY+ ++G    +WSSKKQ  V  S+ +AEY + A+      W+ +LL   GI    P VI+ DN     L  NPVFH R KH
Subjt:  GYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKH

Query:  IDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGV
        I   +HFIR+ +    ++V +V T DQ+AD  TKPL+   F N    +GV
Subjt:  IDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGV

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.0e-76

34.43

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Query:  KWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQE----YKV
        KWV+KIK N  G +E+YK RLVAKGY+Q++GID+ E F+PV +L +++L++A++A  N+ + Q+D+ + FLNG L+EE+Y++ PPGY  +  +      V
Subjt:  KWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQE----YKV

Query:  LKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSE
          LKK++YGLKQA R W  + +   +  G+++   +H+ ++K+      L V +YVD +I   N  +  ++LK  +   F++ D+G + Y+LG+E+ +S 
Subjt:  LKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSE

Query:  EGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHEEGDDVDPSYFKSLLWIGESIY------GISYNYS-------------LKVAKRILRYLRG
         GI I Q +Y  ++L++  ++  KP ++P++     S H  GD VD   ++ L  IG  +Y       IS+  +              +   +IL Y++G
Subjt:  EGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHEEGDDVDPSYFKSLLWIGESIY------GISYNYS-------------LKVAKRILRYLRG

Query:  TLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNK
        T+   LFYSS  E +L+ + D+ +    + R+ST+GY  F+G++  +W SKKQ +V+ S+ +AEY A +      +WL    +   +    PT++  DN 
Subjt:  TLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYVAAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNK

Query:  STIALAKNPVFHDRSKHIDTRFHFIRD
        + I +A N VFH+R+KHI++  H +R+
Subjt:  STIALAKNPVFHDRSKHIDTRFHFIRD

ATMG00240.1 Gag-Pol-related retrotransposon family protein

5.9e-04

29.51

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Query:  LKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGY-----VFFIGS
        ++   ++L Y++GT+   LFYS++ + +L+ + DS WA   + R+S +G+     ++F+G+
Subjt:  LKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGY-----VFFIGS

ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

3.6e-09

36.47

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Query:  NRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEK
        NRTI+   RSML    +PK F A A   AV++ N+ P+ ++    P + W    P+  +LR FGC+AY H  + K      K E+
Subjt:  NRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEK

ATMG00810.1 DNA/RNA polymerases superfamily protein

6.9e-29

30.53

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Query:  LVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHEEGDDVDPSY
        + + LYVD ++ TG+  ++   L   ++  F M D+G + Y+LGI++K    G+F+SQ +Y  +IL    M++ KP++ P+      S        DPS 
Subjt:  LVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLSKHEEGDDVDPSY

Query:  FKSLL----WIGESIYGISYNYSL-------------KVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSK
        F+S++    ++  +   ISY  ++              + KR+LRY++GT+ + L+   + +  ++ +CDS WAG T+ R+ST+G+  F+G    +WS+K
Subjt:  FKSLL----WIGESIYGISYNYSL-------------KVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSK

Query:  KQPIVTLSTCQAEYVAAASCVCHAVW
        +QP V+ S+ + EY A A       W
Subjt:  KQPIVTLSTCQAEYVAAASCVCHAVW

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

6.7e-08

43.75

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Query:  LNQSV---KWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQ
        +NQ++   KWVFK K +  G +++ K RLVAKG+ Q +GI + E ++PV R  TIR ++ +A Q
Subjt:  LNQSV---KWVFKIKRNEKGEVEKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQ

Sequences

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CDS sequence

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ATGACAGTTCCATTTACTCCTCAACAAAATGGTGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGACTCGAAGCATGTTGAAGTACAAGAAGATGCCAAAAGAATT
TTGGGCACAAGCTGTTGAGTGTGCAGTGTACTTGTCAAATCGTTCCCCTACTAGAAGCTTATGGAACAAAACTCCTCAACAAGCATGGGCAGGAAGAAAACCATCCATTG
ATCATTTGAGAGTATTCGGATGCATGGCTTATGCGCATATACCTGATCAAAAGCGTAGTAAGCTTGATGATAAAAGTGAGAAATATGTTTTTGTTGGCTATGATGCAAGC
TCAAAAGGCTACAAGCTTTATAATCCTGTTACAAAGAAGACGATCGTAAGTAGAGATGTTGTGTTTGATGAAGAAACATCATGGAATTGGAATGACGAACCAGAAGATTA
CAAATTTTTGTTTTTTCCCGACGATCGTGATGAGCCTAGTGACATTGCTTCTCCACCAACATCATCAATCACTCTACAACAAAGCACATCTTCATCATCTTCAAGTTCAA
GTGAAGAACCTCGTGGCATGAGAAGCTTACGAGACATATATGATGAAACTGAAGAGTTAAATCAAAGTGTCAAATGGGTGTTCAAGATAAAAAGAAATGAAAAGGGAGAA
GTGGAGAAATACAAAACAAGATTAGTTGCAAAAGGATATTCTCAAAGAAAAGGCATTGATTATGATGAAGTATTTGCACCCGTTGCTCGTTTGAAAACTATAAGGTTGTT
AATTGCTCTTGCTGCACAAAATAATTGGAAAATCTTTCAGATGGATGTCAAATCGACATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTGGAACAACCTCCTGGTT
ATTGTGTGAAAGGCCAAGAGTATAAAGTTCTAAAATTGAAGAAGGCATTATACGGATTGAAACAAGCACCAAGAATGTGGAATAGCAGAATCAACAAATATTTTCTTGAT
AATGGGTATTTAAGGTGTCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTAGTTTGTTTGTACGTGGATTACTTAATTTTTACAGGAAA
TTGTGCAAGTATGTTTGAAGATCTCAAGAAGGCGATGACCCAAGAATTTGAAATGACAGATATAGGGCTAATGTCATATTATCTTGGCATTGAAGTGAAGCAGTCAGAGG
AAGGAATTTTCATCTCTCAAGAACGATATACTAGAGAAATTCTAGAGAAGTTCAATATGATGAATTCTAAGCCTGTCGCAATTCCGATTGAAACTGGGACCAAATTGTCC
AAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGCTTTGGATTGGTGAGTCGATTTATGGAATCTCCTACAACTACTCATTAAAAGTGGCAAAGAG
AATTCTTCGTTACCTCAGAGGTACGCTTGACTATGAGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGGCTGGGCTGGAGATACTAATG
ATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAGTACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTCAGGCAGAATACGTT
GCTGCAGCTTCATGTGTTTGTCATGCAGTTTGGTTAAGAAATTTGTTAAAGACATTTGGAATTTTGCAAGATGATCCAACTGTGATTCATGTAGACAATAAGTCAACAAT
TGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTTATCAGAGATTGCATTTCAAGGAAAGAAGTTCAAGTTGAATATGTGA
AGACTGAAGATCAAATTGCTGATATTTTTACGAAGCCACTCAATGTTAATGTGTTTAATAATTTAAGAACTTTGCTTGGAGTTTTTTTTTTTTTTTTTAAAAAAAACATG
TTTAAGGGAGGATGTTGA

mRNA sequence

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Protein sequence

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MTVPFTPQQNGVVERKNRTILNMTRSMLKYKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWAGRKPSIDHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDAS
SKGYKLYNPVTKKTIVSRDVVFDEETSWNWNDEPEDYKFLFFPDDRDEPSDIASPPTSSITLQQSTSSSSSSSSEEPRGMRSLRDIYDETEELNQSVKWVFKIKRNEKGE
VEKYKTRLVAKGYSQRKGIDYDEVFAPVARLKTIRLLIALAAQNNWKIFQMDVKSTFLNGYLEEEVYLEQPPGYCVKGQEYKVLKLKKALYGLKQAPRMWNSRINKYFLD
NGYLRCPYEHSLYIKVNGHGDILVVCLYVDYLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVAIPIETGTKLS
KHEEGDDVDPSYFKSLLWIGESIYGISYNYSLKVAKRILRYLRGTLDYELFYSSSKEFKLEGYCDSGWAGDTNDRKSTSGYVFFIGSTAFTWSSKKQPIVTLSTCQAEYV
AAASCVCHAVWLRNLLKTFGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLNVNVFNNLRTLLGVFFFFFKKNM
FKGGC

Cmc09g0240691 (gene) of Melon (Charmono) v1.1 genome