CuGenDBv2

Gene ID	Cmc09g0241021
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:3086509..3087381
RNA-Seq Expression	Cmc09g0241021
Synteny	Cmc09g0241021
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037490.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]

8.7e-164

100

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK

Query:  LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF
        LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF
Subjt:  LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.0e-148

88.82

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLF LPRT SGHDGIWVIVDRLTKT +FIPIK TSTLDQLARLYVDKIVSQY VPVSIVSDRDPRFT KFWPSLQKAM TGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS               RTPVCWNEVGERKLVGP+LVQITTNNIKLIRENL+ AQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR

Query:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ
        RRNLEFQV DQVFLKLSPWRGV+RFGRKGKLS RYIGPYQITERVGPAAYRLELPIELARIH VFHVSMLRKYIPDPSHVLQ+Q VELKEDLSYVEEPVQ
Subjt:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ

Query:  ILEK
        IL++
Subjt:  ILEK

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.0e-148

88.82

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLF LPRT SGHDGIWVIVDRLTKT +FIPIK TSTLDQLARLYVDKIVSQY VPVSIVSDRDPRFT KFWPSLQKAM TGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS               RTPVCWNEVGERKLVGP+LVQITTNNIKLIRENL+ AQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR

Query:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ
        RRNLEFQV DQVFLKLSPWRGV+RFGRKGKLS RYIGPYQITERVGPAAYRLELPIELARIH VFHVSMLRKYIPDPSHVLQ+Q VELKEDLSYVEEPVQ
Subjt:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ

Query:  ILEK
        IL++
Subjt:  ILEK

TYK01965.1 hypothetical protein E5676_scaffold808G00660 [Cucumis melo var. makuwa]

8.7e-164

100

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK

Query:  LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF
        LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF
Subjt:  LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]

3.0e-148

88.82

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLF LPRT SGHDGIWVIVDRLTKT +FIPIK TSTLDQLARLYVDKIVSQY VPVSIVSDRDPRFT KFWPSLQKAM TGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS               RTPVCWNEVGERKLVGP+LVQITTNNIKLIRENL+ AQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR

Query:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ
        RRNLEFQV DQVFLKLSPWRGV+RFGRKGKLS RYIGPYQITERVGPAAYRLELPIELARIH VFHVSMLRKYIPDPSHVLQ+Q VELKEDLSYVEEPVQ
Subjt:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ

Query:  ILEK
        IL++
Subjt:  ILEK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T292 Retrotransposon protein, putative, Ty3-gypsy subclass

4.2e-164

100

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK

Query:  LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF
        LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF
Subjt:  LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF

A0A5A7U2V7 Reverse transcriptase

1.5e-148

88.82

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLF LPRT SGHDGIWVIVDRLTKT +FIPIK TSTLDQLARLYVDKIVSQY VPVSIVSDRDPRFT KFWPSLQKAM TGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS               RTPVCWNEVGERKLVGP+LVQITTNNIKLIRENL+ AQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR

Query:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ
        RRNLEFQV DQVFLKLSPWRGV+RFGRKGKLS RYIGPYQITERVGPAAYRLELPIELARIH VFHVSMLRKYIPDPSHVLQ+Q VELKEDLSYVEEPVQ
Subjt:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ

Query:  ILEK
        IL++
Subjt:  ILEK

A0A5D3BHI1 Reverse transcriptase

1.5e-148

88.82

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLF LPRT SGHDGIWVIVDRLTKT +FIPIK TSTLDQLARLYVDKIVSQY VPVSIVSDRDPRFT KFWPSLQKAM TGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS               RTPVCWNEVGERKLVGP+LVQITTNNIKLIRENL+ AQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR

Query:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ
        RRNLEFQV DQVFLKLSPWRGV+RFGRKGKLS RYIGPYQITERVGPAAYRLELPIELARIH VFHVSMLRKYIPDPSHVLQ+Q VELKEDLSYVEEPVQ
Subjt:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ

Query:  ILEK
        IL++
Subjt:  ILEK

A0A5D3BS00 Integrase catalytic domain-containing protein

4.2e-164

100

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLK

Query:  LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF
        LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF
Subjt:  LSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF

A0A5D3BS67 Reverse transcriptase

1.5e-148

88.82

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDFLF LPRT SGHDGIWVIVDRLTKT +FIPIK TSTLDQLARLYVDKIVSQY VPVSIVSDRDPRFT KFWPSLQKAM TGLKFSTSFHPQTDGQSER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS               RTPVCWNEVGERKLVGP+LVQITTNNIKLIRENL+ AQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS---------------RTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKR

Query:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ
        RRNLEFQV DQVFLKLSPWRGV+RFGRKGKLS RYIGPYQITERVGPAAYRLELPIELARIH VFHVSMLRKYIPDPSHVLQ+Q VELKEDLSYVEEPVQ
Subjt:  RRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQ

Query:  ILEK
        IL++
Subjt:  ILEK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.6e-30

31.14

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDF+  LP + SG++ ++V+VDR +K A  +P   + T +Q AR++  ++++ +  P  I++D D  FT + W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR
        T QT+E +LR        +W  H+ L++ +YNN   S T +   E+  R       L  P     T  N        + ++E+L     + K Y D + +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR

Query:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY
         + EFQ  D V +K +   G +   +  KL+  + GP+ + ++ GP  Y L+LP  +  +    FHVS L KY
Subjt:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein

2.6e-30

31.14

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDF+  LP + SG++ ++V+VDR +K A  +P   + T +Q AR++  ++++ +  P  I++D D  FT + W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR
        T QT+E +LR        +W  H+ L++ +YNN   S T +   E+  R       L  P     T  N        + ++E+L     + K Y D + +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR

Query:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY
         + EFQ  D V +K +   G +   +  KL+  + GP+ + ++ GP  Y L+LP  +  +    FHVS L KY
Subjt:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein

2.6e-30

31.14

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDF+  LP + SG++ ++V+VDR +K A  +P   + T +Q AR++  ++++ +  P  I++D D  FT + W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR
        T QT+E +LR        +W  H+ L++ +YNN   S T +   E+  R       L  P     T  N        + ++E+L     + K Y D + +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR

Query:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY
         + EFQ  D V +K +   G +   +  KL+  + GP+ + ++ GP  Y L+LP  +  +    FHVS L KY
Subjt:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein

2.6e-30

31.14

Show/hide

Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDF+  LP + SG++ ++V+VDR +K A  +P   + T +Q AR++  ++++ +  P  I++D D  FT + W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR
        T QT+E +LR        +W  H+ L++ +YNN   S T +   E+  R       L  P     T  N        + ++E+L     + K Y D + +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR

Query:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY
         + EFQ  D V +K +   G +   +  KL+  + GP+ + ++ GP  Y L+LP  +  +    FHVS L KY
Subjt:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein

2.6e-30

31.14

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Query:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER
        MDF+  LP + SG++ ++V+VDR +K A  +P   + T +Q AR++  ++++ +  P  I++D D  FT + W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR
        T QT+E +LR        +W  H+ L++ +YNN   S T +   E+  R       L  P     T  N        + ++E+L     + K Y D + +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGER------KLVGPDLVQITTNN-------IKLIRENLKIAQDRQKSYADKRRR

Query:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY
         + EFQ  D V +K +   G +   +  KL+  + GP+ + ++ GP  Y L+LP  +  +    FHVS L KY
Subjt:  NL-EFQVEDQVFLKLSPWRGVVRFGRKGKLSSRYIGPYQITERVGPAAYRLELPIELARI-HYVFHVSMLRKY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTTCTATTTCGATTACCTCGTACATTCAGTGGACATGATGGTATATGGGTAATAGTAGATAGACTCACCAAGACGGCACAATTTATACCGATTAAAGCGACATC
TACGTTAGACCAGCTAGCTAGATTATATGTTGATAAGATTGTGAGTCAGTATGAAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTTTAAATTTTGGC
CTAGTTTACAGAAAGCAATGCGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGA
GCATGTGTCCTTCAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGAACTCCTGTGTGCTGGAATGAAGTGGG
AGAGCGGAAGTTAGTAGGTCCTGATTTGGTTCAGATTACGACAAACAATATTAAATTGATCAGAGAAAATCTGAAGATAGCCCAAGATCGACAGAAAAGTTATGCGGATA
AGCGACGAAGAAACCTAGAATTCCAAGTTGAAGATCAAGTTTTCTTGAAATTATCTCCATGGCGAGGTGTTGTTCGTTTCGGAAGAAAAGGTAAGTTAAGTTCTAGATAT
ATTGGGCCATATCAGATAACAGAACGAGTGGGACCAGCAGCGTATAGACTTGAGTTGCCAATAGAACTTGCACGAATACATTATGTTTTCCATGTATCCATGTTAAGAAA
ATATATACCAGATCCATCACATGTGTTGCAAGAGCAATCCGTTGAATTAAAAGAAGATTTGAGTTATGTTGAAGAACCAGTTCAGATTCTCGAAAAGTTTTGA

mRNA sequence

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Protein sequence

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MDFLFRLPRTFSGHDGIWVIVDRLTKTAQFIPIKATSTLDQLARLYVDKIVSQYEVPVSIVSDRDPRFTFKFWPSLQKAMRTGLKFSTSFHPQTDGQSERTIQTLEDMLR
ACVLQLKGSWDTHLPLMEFAYNNNYQSRTPVCWNEVGERKLVGPDLVQITTNNIKLIRENLKIAQDRQKSYADKRRRNLEFQVEDQVFLKLSPWRGVVRFGRKGKLSSRY
IGPYQITERVGPAAYRLELPIELARIHYVFHVSMLRKYIPDPSHVLQEQSVELKEDLSYVEEPVQILEKF

Cmc09g0241021 (gene) of Melon (Charmono) v1.1 genome