| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-309 | 79.23 | Show/hide |
Query: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
MTLKVGTGDVISAR VGD KLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAF KNG HICSAKLENNLYVLRPNEAKAVLNHEMFRT
Subjt: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Query: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
NTQNKRQRISPNNNTYLWHLRLGHINLDRI RLVKNGLLN+L++ SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCG MNVKAR FEYFISF
Subjt: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
Query: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
IDDY RYGYLYLMEHKS+ALEKFK+YK EVENLLSKKIKILRSDRGGEYMDLRFQDYM++H IQSQLSAP T QQNGVSERRNRTLLDM
Subjt: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
Query: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
GYAVETAV+ILNNVPSKSVSETPFELWR RKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL+EDH
Subjt: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS--------------------------------------------------------------
MR+HKPRSKLVL+EATD STRVVDEVG SSRVD+TTTS
Subjt: MRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS--------------------------------------------------------------
Query: -------------------------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG
GCKWIYKRKRDSAGKV TFKARLVAKGYTQRE VDYEETFSPVAMLKSIRILLSIA FYDYEIWQMDVKT FLNG
Subjt: -------------------------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG
Query: NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAA
NLEESIFMSQPEGFITQGQEQKVCKLN SIY LKQASRS NIRFDT IKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLI N+V YLTDVK WLAA
Subjt: NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAA
Query: QFQ
QFQ
Subjt: QFQ
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| KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa] | 2.8e-305 | 78.24 | Show/hide |
Query: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
MTLKVGTGDVISAR VGD KLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAF KNG HICSAKLENNLYVLRPNEAKAVLNHEMFRT
Subjt: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Query: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
NTQNKRQRISPNNNTYLWHLRLGHINLDRI RLVK+GLLN+L++ SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCG MNVKAR FEYFISF
Subjt: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
Query: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
IDDY RYGYLYLMEHKS+ALEKFK+YK EVENLLSKKIKI RSDRGGEYMDL FQDYM++H IQSQLSAP T QQNGVSERRNRTLLDM
Subjt: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
Query: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
GYAVETAV+ILNNVPSKSVSETPFELWR RKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFL+EDH
Subjt: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS--------------------------------------------------------------
MR+HKPRSKLVL+EATD STRVVDEVG SSRVD+TTTS
Subjt: MRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS--------------------------------------------------------------
Query: -------------------------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG
GCKWIYKRKRDSAGKV TFKARLVAKGYT++E VDYEETFS VAMLKSIRILLSIA FYDYEIWQMDVKT FLNG
Subjt: -------------------------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG
Query: NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAA
NLEESIFMSQPEGFITQGQEQKVCKLN SIY LKQASRS NIRFDT IKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLI N+V YLTDVK WLAA
Subjt: NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAA
Query: QFQ
QFQ
Subjt: QFQ
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| KAA0037509.1 gag/pol protein [Cucumis melo var. makuwa] | 1.7e-275 | 95.61 | Show/hide |
Query: AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEP
AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEP
Subjt: AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEP
Query: LELIHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQ
LELIHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQ
Subjt: LELIHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQ
Query: QNGVSERRNRTLLDMGYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV
QNG GYAVETAVYILNNVPSKSVSET FELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV
Subjt: QNGVSERRNRTLLDMGYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV
Query: STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS---------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSP
STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSP
Subjt: STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS---------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSP
Query: VAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKIN
VAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKIN
Subjt: VAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKIN
Query: K
K
Subjt: K
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| KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa] | 1.5e-247 | 63.93 | Show/hide |
Query: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
MT++VGTG V+SA VG +L + F+ LEN+Y+VP +KRNL+SV CL+E YS+ F++N+ F KNG ICSAKLENNLYVLR +KA+LN EMF+T
Subjt: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Query: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
TQNKR +ISP N +LWHLRLGHINL+RIERLVKNGLL+ELE +SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HSDLCG MNVKAR FEYFI+F
Subjt: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
Query: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
DDY RYGY+YLM+HKS+ALEKFK+YKAEVEN LSK IK RSDRGGEYMDL+FQ+Y+++ I SQLSAP T QQNGVSERRNRTLLDM
Subjt: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
Query: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
GYAV+TAVYILN VPSKSVSETP +LW RK SL HFRIWGCPAHVL NPKKLEPRS+LC FVGYPK TRGG F+DP++N+VFVSTNATFL+EDH
Subjt: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLN----EATDGSTRVVDE---------VGLSSRVDQTTT--------------------------------------------------
+R+HKPRSK+VLN E T+ STRVV+E VG S+R Q +
Subjt: MRDHKPRSKLVLN----EATDGSTRVVDE---------VGLSSRVDQTTT--------------------------------------------------
Query: ----------------------------SGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT
GCKWIYKRKR + GKV TFKARLVAKGYTQ E VDYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKT
Subjt: ----------------------------SGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT
Query: FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKT
FLNGNLEE+I+M QPEGFI GQEQK+CKLN SIY LKQASRS NIRFDT IKSYGFDQ VDEPCVYK+I VAFLVLYVDDILLI N++ LTD+K
Subjt: FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKT
Query: WLAAQFQ
WLA QFQ
Subjt: WLAAQFQ
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| TYK14550.1 gag/pol protein [Cucumis melo var. makuwa] | 1.5e-247 | 63.93 | Show/hide |
Query: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
MT++VGTG V+SA VG +L + F+ LEN+Y+VP +KRNL+SV CL+E YS+ F++N+ F KNG ICSAKLENNLYVLR +KA+LN EMF+T
Subjt: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Query: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
TQNKR +ISP N +LWHLRLGHINL+RIERLVKNGLL+ELE +SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HSDLCG MNVKAR FEYFI+F
Subjt: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
Query: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
DDY RYGY+YLM+HKS+ALEKFK+YKAEVEN LSK IK RSDRGGEYMDL+FQ+Y+++ I SQLSAP T QQNGVSERRNRTLLDM
Subjt: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
Query: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
GYAV+TAVYILN VPSKSVSETP +LW RK SL HFRIWGCPAHVL NPKKLEPRS+LC FVGYPK TRGG F+DP++N+VFVSTNATFL+EDH
Subjt: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLN----EATDGSTRVVDE---------VGLSSRVDQTTT--------------------------------------------------
+R+HKPRSK+VLN E T+ STRVV+E VG S+R Q +
Subjt: MRDHKPRSKLVLN----EATDGSTRVVDE---------VGLSSRVDQTTT--------------------------------------------------
Query: ----------------------------SGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT
GCKWIYKRKR + GKV TFKARLVAKGYTQ E VDYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKT
Subjt: ----------------------------SGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT
Query: FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKT
FLNGNLEE+I+M QPEGFI GQEQK+CKLN SIY LKQASRS NIRFDT IKSYGFDQ VDEPCVYK+I VAFLVLYVDDILLI N++ LTD+K
Subjt: FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKT
Query: WLAAQFQ
WLA QFQ
Subjt: WLAAQFQ
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SMH8 Gag/pol protein | 7.5e-248 | 63.93 | Show/hide |
Query: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
MT++VGTG V+SA VG +L + F+ LEN+Y+VP +KRNL+SV CL+E YS+ F++N+ F KNG ICSAKLENNLYVLR +KA+LN EMF+T
Subjt: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Query: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
TQNKR +ISP N +LWHLRLGHINL+RIERLVKNGLL+ELE +SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HSDLCG MNVKAR FEYFI+F
Subjt: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
Query: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
DDY RYGY+YLM+HKS+ALEKFK+YKAEVEN LSK IK RSDRGGEYMDL+FQ+Y+++ I SQLSAP T QQNGVSERRNRTLLDM
Subjt: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
Query: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
GYAV+TAVYILN VPSKSVSETP +LW RK SL HFRIWGCPAHVL NPKKLEPRS+LC FVGYPK TRGG F+DP++N+VFVSTNATFL+EDH
Subjt: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLN----EATDGSTRVVDE---------VGLSSRVDQTTT--------------------------------------------------
+R+HKPRSK+VLN E T+ STRVV+E VG S+R Q +
Subjt: MRDHKPRSKLVLN----EATDGSTRVVDE---------VGLSSRVDQTTT--------------------------------------------------
Query: ----------------------------SGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT
GCKWIYKRKR + GKV TFKARLVAKGYTQ E VDYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKT
Subjt: ----------------------------SGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT
Query: FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKT
FLNGNLEE+I+M QPEGFI GQEQK+CKLN SIY LKQASRS NIRFDT IKSYGFDQ VDEPCVYK+I VAFLVLYVDDILLI N++ LTD+K
Subjt: FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKT
Query: WLAAQFQ
WLA QFQ
Subjt: WLAAQFQ
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| A0A5A7T2V9 Gag/pol protein | 1.3e-305 | 78.24 | Show/hide |
Query: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
MTLKVGTGDVISAR VGD KLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAF KNG HICSAKLENNLYVLRPNEAKAVLNHEMFRT
Subjt: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Query: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
NTQNKRQRISPNNNTYLWHLRLGHINLDRI RLVK+GLLN+L++ SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCG MNVKAR FEYFISF
Subjt: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
Query: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
IDDY RYGYLYLMEHKS+ALEKFK+YK EVENLLSKKIKI RSDRGGEYMDL FQDYM++H IQSQLSAP T QQNGVSERRNRTLLDM
Subjt: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
Query: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
GYAVETAV+ILNNVPSKSVSETPFELWR RKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFL+EDH
Subjt: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS--------------------------------------------------------------
MR+HKPRSKLVL+EATD STRVVDEVG SSRVD+TTTS
Subjt: MRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS--------------------------------------------------------------
Query: -------------------------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG
GCKWIYKRKRDSAGKV TFKARLVAKGYT++E VDYEETFS VAMLKSIRILLSIA FYDYEIWQMDVKT FLNG
Subjt: -------------------------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG
Query: NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAA
NLEESIFMSQPEGFITQGQEQKVCKLN SIY LKQASRS NIRFDT IKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLI N+V YLTDVK WLAA
Subjt: NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAA
Query: QFQ
QFQ
Subjt: QFQ
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| A0A5A7T820 Gag/pol protein | 8.5e-276 | 95.61 | Show/hide |
Query: AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEP
AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEP
Subjt: AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEP
Query: LELIHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQ
LELIHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQ
Subjt: LELIHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQ
Query: QNGVSERRNRTLLDMGYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV
QNG GYAVETAVYILNNVPSKSVSET FELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV
Subjt: QNGVSERRNRTLLDMGYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV
Query: STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS---------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSP
STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSP
Subjt: STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS---------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSP
Query: VAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKIN
VAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKIN
Subjt: VAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKIN
Query: K
K
Subjt: K
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| A0A5A7TZD0 Gag/pol protein | 6.7e-310 | 79.23 | Show/hide |
Query: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
MTLKVGTGDVISAR VGD KLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAF KNG HICSAKLENNLYVLRPNEAKAVLNHEMFRT
Subjt: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Query: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
NTQNKRQRISPNNNTYLWHLRLGHINLDRI RLVKNGLLN+L++ SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCG MNVKAR FEYFISF
Subjt: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
Query: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
IDDY RYGYLYLMEHKS+ALEKFK+YK EVENLLSKKIKILRSDRGGEYMDLRFQDYM++H IQSQLSAP T QQNGVSERRNRTLLDM
Subjt: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
Query: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
GYAVETAV+ILNNVPSKSVSETPFELWR RKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL+EDH
Subjt: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS--------------------------------------------------------------
MR+HKPRSKLVL+EATD STRVVDEVG SSRVD+TTTS
Subjt: MRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS--------------------------------------------------------------
Query: -------------------------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG
GCKWIYKRKRDSAGKV TFKARLVAKGYTQRE VDYEETFSPVAMLKSIRILLSIA FYDYEIWQMDVKT FLNG
Subjt: -------------------------GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG
Query: NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAA
NLEESIFMSQPEGFITQGQEQKVCKLN SIY LKQASRS NIRFDT IKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLI N+V YLTDVK WLAA
Subjt: NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAA
Query: QFQ
QFQ
Subjt: QFQ
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| A0A5D3CPJ6 Gag/pol protein | 7.5e-248 | 63.93 | Show/hide |
Query: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
MT++VGTG V+SA VG +L + F+ LEN+Y+VP +KRNL+SV CL+E YS+ F++N+ F KNG ICSAKLENNLYVLR +KA+LN EMF+T
Subjt: MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRT
Query: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
TQNKR +ISP N +LWHLRLGHINL+RIERLVKNGLL+ELE +SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HSDLCG MNVKAR FEYFI+F
Subjt: TNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISF
Query: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
DDY RYGY+YLM+HKS+ALEKFK+YKAEVEN LSK IK RSDRGGEYMDL+FQ+Y+++ I SQLSAP T QQNGVSERRNRTLLDM
Subjt: IDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM-----------
Query: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
GYAV+TAVYILN VPSKSVSETP +LW RK SL HFRIWGCPAHVL NPKKLEPRS+LC FVGYPK TRGG F+DP++N+VFVSTNATFL+EDH
Subjt: ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLN----EATDGSTRVVDE---------VGLSSRVDQTTT--------------------------------------------------
+R+HKPRSK+VLN E T+ STRVV+E VG S+R Q +
Subjt: MRDHKPRSKLVLN----EATDGSTRVVDE---------VGLSSRVDQTTT--------------------------------------------------
Query: ----------------------------SGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT
GCKWIYKRKR + GKV TFKARLVAKGYTQ E VDYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKT
Subjt: ----------------------------SGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT
Query: FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKT
FLNGNLEE+I+M QPEGFI GQEQK+CKLN SIY LKQASRS NIRFDT IKSYGFDQ VDEPCVYK+I VAFLVLYVDDILLI N++ LTD+K
Subjt: FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKT
Query: WLAAQFQ
WLA QFQ
Subjt: WLAAQFQ
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 3.5e-61 | 26.08 | Show/hide |
Query: GDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHIC-SAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNK
G+ I A G +L +++ + LE++ + NL+SV L E SI F + SKNG + ++ + NN+ V+N + + + N ++K
Subjt: GDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHIC-SAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNK
Query: RQRISPNNNTYLWHLRLGHIN------LDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRA--KEPLELIHSDLCGSMNVKAREDFEYFI
NN LWH R GHI+ + R LLN LE S CE CL GK + PF + K PL ++HSD+CG + +D YF+
Subjt: RQRISPNNNTYLWHLRLGHIN------LDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRA--KEPLELIHSDLCGSMNVKAREDFEYFI
Query: SFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD----------
F+D + Y YL+++KS F+D+ A+ E + K+ L D G EY+ + + +K I L+ P T Q NGVSER RT+ +
Subjt: SFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD----------
Query: -----MGYAVETAVYILNNVPSKSV---SETPFELWRERKPSLSHFRIWGCPAHVLVTNPK-KLEPRSRLCQFVGYPKETRGGLFFD-------------
G AV TA Y++N +PS+++ S+TP+E+W +KP L H R++G +V + N + K + +S FVGY E G +D
Subjt: -----MGYAVETAVYILNNVPSKSV---SETPFELWRERKPSLSHFRIWGCPAHVLVTNPK-KLEPRSRLCQFVGYPKETRGGLFFD-------------
Query: ------------------------------PQENRVFVST----------NATFLKE-------------------------------DHMRDHKPRSKL
P ++R + T N FLK+ ++D K +K
Subjt: ------------------------------PQENRVFVST----------NATFLKE-------------------------------DHMRDHKPRSKL
Query: VLNEA----------------------------------------------------------------TDGSTRVV---------------DEV-----
LNE+ D S V DE+
Subjt: VLNEA----------------------------------------------------------------TDGSTRVV---------------DEV-----
Query: ---------------------GLSSRVDQTTTSGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMD
++ R + +W++ K + G +KARLVA+G+TQ+ +DYEETF+PVA + S R +LS+ I Y+ ++ QMD
Subjt: ---------------------GLSSRVDQTTTSGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMD
Query: VKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVY--KKINKGKVAFLVLYVDDILLIRNNVRY
VKT FLNG L+E I+M P+G VCKLN +IY LKQA+R F+ +K F + + C+Y K N + +++LYVDD+++ ++
Subjt: VKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVY--KKINKGKVAFLVLYVDDILLIRNNVRY
Query: LTDVKTWLAAQFQ
+ + K +L +F+
Subjt: LTDVKTWLAAQFQ
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 8.9e-81 | 28.69 | Show/hide |
Query: GTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTN--T
G GD+ VG T + L+++ VP ++ NL+S L Y F+ N+ + G+ + AK V ++RT
Subjt: GTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTN--T
Query: QNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISFIDD
Q + + LWH R+GH++ ++ L K L++ + ++ PC+ CL GK + F R L+L++SD+CG M +++ +YF++FIDD
Subjt: QNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISFIDD
Query: YLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD---------------
R ++Y+++ K + + F+ + A VE +K+K LRSD GGEY F++Y H I+ + + P T Q NGV+ER NRT+++
Subjt: YLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD---------------
Query: MGYAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCP--AHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
G AV+TA Y++N PS ++ E P +W ++ S SH +++GC AHV KL+ +S C F+GY E G +DP + +V S + F +E
Subjt: MGYAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCP--AHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDH
Query: MRDHKPRSKLVLN----------------EATDGSTRVVDEVG---------------------------------------------------------
+R S+ V N + + +T V E G
Subjt: MRDHKPRSKLVLN----------------EATDGSTRVVDEVG---------------------------------------------------------
Query: ---------------------LSSRVDQTTTSG---------------CKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILL
+ ++ +G CKW++K K+D K+ +KARLV KG+ Q++ +D++E FSPV + SIR +L
Subjt: ---------------------LSSRVDQTTTSG---------------CKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILL
Query: SIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVY-KKINKGKVAFLVLY
S+A D E+ Q+DVKT FL+G+LEE I+M QPEGF G++ VCKLN S+Y LKQA R ++FD+ +KS + + +PCVY K+ ++ L+LY
Subjt: SIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVY-KKINKGKVAFLVLY
Query: VDDILLIRNNVRYLTDVKTWLAAQF
VDD+L++ + + +K L+ F
Subjt: VDDILLIRNNVRYLTDVKTWLAAQF
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 5.0e-15 | 26.28 | Show/hide |
Query: ISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRI
I +G+ F+N P I +L+S+S L + F+ N +G + + Y L ++ + +H T N NK +
Subjt: ISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRI
Query: SPNNNTY-LWHLRLGHINLDRIERLVKNGLLN-------ELENDSLPPCESCLEGKMTKRPFTGKGYRAK-----EPLELIHSDLCGSMNVKAREDFEYF
S N Y L H LGH N I++ +K + E N S C CL GK TK KG R K EP + +H+D+ G ++ + YF
Subjt: SPNNNTY-LWHLRLGHINLDRIERLVKNGLLN-------ELENDSLPPCESCLEGKMTKRPFTGKGYRAK-----EPLELIHSDLCGSMNVKAREDFEYF
Query: ISFIDDYLRYGYLYLM--EHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD
ISF D+ R+ ++Y + + L F A ++N + ++ +++ DRG EY + + I + + + ++ +GV+ER NRTLL+
Subjt: ISFIDDYLRYGYLYLM--EHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 7.4e-51 | 22.48 | Show/hide |
Query: VGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMF
V G I G T L +++ + L N+ VP I +NL+SV L + +F + + T G + K ++ LY ++ V +F
Subjt: VGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMF
Query: RTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELE-NDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYF
+ +++ WH RLGH + ++ N L+ L + C CL K K PF+ + PLE I+SD+ S + + +++ Y+
Subjt: RTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELE-NDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYF
Query: ISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMG-------
+ F+D + RY +LY ++ KS+ E F +K +EN +I SD GGE++ L +Y +H I S P T + NG+SER++R +++ G
Subjt: ISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMG-------
Query: --------YAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCPAHVLVT--NPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNAT
YA AVY++N +P+ + E+PF+ P+ R++GC + + N KL+ +SR C F+GY L Q +R+++S +
Subjt: --------YAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCPAHVLVT--NPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNAT
Query: F---------------------------------------------LKEDH-------------------------------------------------
F + H
Subjt: F---------------------------------------------LKEDH-------------------------------------------------
Query: --------------------------------------------------------------------------------MRDH-------------KPR
+ H P+
Subjt: --------------------------------------------------------------------------------MRDH-------------KPR
Query: SKLVLNEATDGSTRVVDEV--------GLSSRVD----------------QTTTSGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAM
L ++ A + R + + S ++ T GC+WI+ +K +S G ++ +KARLVAKGY QR +DY ETFSPV
Subjt: SKLVLNEATDGSTRVVDEV--------GLSSRVD----------------QTTTSGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAM
Query: LKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGK
SIRI+L +A+ + I Q+DV FL G L + ++MSQP GFI + + VCKL ++Y LKQA R+ + + + GF +V + ++
Subjt: LKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGK
Query: VAFLVLYVDDILLIRNNVRYLTDVKTWLAAQF
+ ++++YVDDIL+ N+ L + L+ +F
Subjt: VAFLVLYVDDILLIRNNVRYLTDVKTWLAAQF
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.9e-51 | 22.49 | Show/hide |
Query: VGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMF
+ G I G L ++ + L + VP I +NL+SV L + +F + + T G + K ++ LY ++AV MF
Subjt: VGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMF
Query: RTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELE-NDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYF
+ ++ WH RLGH +L + ++ N L L + L C C K K PF+ + +PLE I+SD+ S + + +++ Y+
Subjt: RTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELE-NDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYF
Query: ISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMG-------
+ F+D + RY +LY ++ KS+ + F +K+ VEN +I L SD GGE++ LR DY+ +H I S P T + NG+SER++R +++MG
Subjt: ISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMG-------
Query: --------YAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCPAHVLVT--NPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNAT
YA AVY++N +P+ + ++PF+ + P+ +++GC + + N KLE +S+ C F+GY L R++ S +
Subjt: --------YAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCPAHVLVT--NPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNAT
Query: F-------------------------------------------------------------------------------------------------LK
F
Subjt: F-------------------------------------------------------------------------------------------------LK
Query: EDHMRDHKPRSKLVLNEATDGS---------------------------------------------------------------------TRVVDEV--
+ H + + +LN S TR D +
Subjt: EDHMRDHKPRSKLVLNEATDGS---------------------------------------------------------------------TRVVDEV--
Query: -------------------------------GLSSRVD----------------QTTTSGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFS
+ S ++ T GC+WI+ +K +S G ++ +KARLVAKGY QR +DY ETFS
Subjt: -------------------------------GLSSRVD----------------QTTTSGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFS
Query: PVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKI
PV SIRI+L +A+ + I Q+DV FL G L + ++MSQP GF+ + + VC+L +IY LKQA R+ + T + + GF ++ + ++
Subjt: PVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKI
Query: NKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAAQF
+ ++++YVDDIL+ N+ L L+ +F
Subjt: NKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAAQF
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