CuGenDBv2

Gene ID	Cmc09g0241241
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	CMiso1.1chr09:3321618..3321794
RNA-Seq Expression	Cmc09g0241241
Synteny	Cmc09g0241241
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0000428 - DNA-directed RNA polymerase complex (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QJU04310.1 RNA polymerase beta subunit [Juniperus saltuaria]

4.3e-14

71.43

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Query:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        K+     VAGRHG KG+IS+ILPR+DM YLQNGTPVDMV NPL VPSR+NVGQI +
Subjt:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

YP_009580381.1 RNA polymerase beta subunit [Juniperus tibetica]

4.3e-14

71.43

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Query:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        K+     VAGRHG KG+IS+ILPR+DM YLQNGTPVDMV NPL VPSR+NVGQI +
Subjt:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

YP_009652674.1 RNA polymerase beta subunit [Juniperus recurva]

4.3e-14

71.43

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Query:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        K+     VAGRHG KG+IS+ILPR+DM YLQNGTPVDMV NPL VPSR+NVGQI +
Subjt:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

YP_009679243.1 RNA polymerase beta subunit [Juniperus squamata]

4.3e-14

71.43

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Query:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        K+     VAGRHG KG+IS+ILPR+DM YLQNGTPVDMV NPL VPSR+NVGQI +
Subjt:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

YP_009752996.1 RNA polymerase subunit beta [Gerrardanthus macrorhizus]

2.5e-14

83.67

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Query:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        VAGRHG KG+IS ILPREDM YLQNGTPVDMVFNPL VPSR+NVGQI +
Subjt:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

TrEMBL top hits

e value

%identity

Alignment

A0A481XXJ0 DNA-directed RNA polymerase subunit beta

2.1e-14

71.43

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Query:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        K+     VAGRHG KG+IS+ILPR+DM YLQNGTPVDMV NPL VPSR+NVGQI +
Subjt:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

A0A4D6QEJ3 DNA-directed RNA polymerase subunit beta

2.1e-14

71.43

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Query:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        K+     VAGRHG KG+IS+ILPR+DM YLQNGTPVDMV NPL VPSR+NVGQI +
Subjt:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

A0A4Y6I5V4 DNA-directed RNA polymerase subunit beta

2.1e-14

71.43

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Query:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        K+     VAGRHG KG+IS+ILPR+DM YLQNGTPVDMV NPL VPSR+NVGQI +
Subjt:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

A0A6H0EUS6 DNA-directed RNA polymerase subunit beta

1.2e-14

83.67

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Query:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        VAGRHG KG+IS ILPREDM YLQNGTPVDMVFNPL VPSR+NVGQI +
Subjt:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

A0A6M5EXR8 DNA-directed RNA polymerase subunit beta

2.1e-14

71.43

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Query:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        K+     VAGRHG KG+IS+ILPR+DM YLQNGTPVDMV NPL VPSR+NVGQI +
Subjt:  KVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

SwissProt top hits

e value

%identity

Alignment

A1E9Z8 DNA-directed RNA polymerase subunit beta

2.8e-16

79.59

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Query:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        VAGRHG KG+IS ILPR+DM YLQ+GTPVDMVFNPL VPSR+NVGQI +
Subjt:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

A6MM28 DNA-directed RNA polymerase subunit beta

7.4e-17

81.63

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Query:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        VAGRHG KG+IS ILPR+DM YLQNGTPVDMVFNPL VPSR+NVGQI +
Subjt:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

A6MMJ9 DNA-directed RNA polymerase subunit beta

2.8e-16

79.59

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Query:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        VAGRHG KG+IS ILPR+DM YLQ+GTPVDMVFNPL VPSR+NVGQI +
Subjt:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

P60282 DNA-directed RNA polymerase subunit beta

2.8e-16

79.59

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Query:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        VAGRHG KG+IS ILPR+DM YLQ+GTPVDMVFNPL VPSR+NVGQI +
Subjt:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

Q4VZP1 DNA-directed RNA polymerase subunit beta

2.2e-16

79.59

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Query:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        VAGRHG KG++S ILPREDM YLQNG PVDMVFNPL VPSR+NVGQI +
Subjt:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

Arabidopsis top hits

e value

%identity

Alignment

AT4G21710.1 DNA-directed RNA polymerase family protein

7.9e-06

35.42

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Query:  AGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        + RHG+KG + +   +EDM +   G   D++ NP  +PSR+ +GQ+++
Subjt:  AGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

AT5G45140.1 nuclear RNA polymerase C2

3.0e-05

35.42

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Query:  AGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        + RHG+KG+  +I+ +ED  + + G   D++ NP   PSR+ VG++++
Subjt:  AGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

ATCG00190.1 RNA polymerase subunit beta

1.0e-16

77.55

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Query:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD
        VAGRHG KG+IS ILPR+DM YLQ+G PVDMVFNPL VPSR+NVGQI +
Subjt:  VAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILD

Sequences

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CDS sequence

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ATGAAAGTAGACGCCCATGTAGCGGTAGCGGGAAGACATGGAAAGAAAGGTCTTATTTCTGTCATTTTGCCTAGAGAAGATATGCTTTATTTGCAAAATGGAACACCTGT
TGATATGGTTTTCAATCCATTAGAAGTCCCTTCACGAGTGAATGTAGGACAAATACTTGACTACTAA

mRNA sequence

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ATGAAAGTAGACGCCCATGTAGCGGTAGCGGGAAGACATGGAAAGAAAGGTCTTATTTCTGTCATTTTGCCTAGAGAAGATATGCTTTATTTGCAAAATGGAACACCTGT
TGATATGGTTTTCAATCCATTAGAAGTCCCTTCACGAGTGAATGTAGGACAAATACTTGACTACTAA

Protein sequence

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MKVDAHVAVAGRHGKKGLISVILPREDMLYLQNGTPVDMVFNPLEVPSRVNVGQILDY

Cmc09g0241241 (gene) of Melon (Charmono) v1.1 genome