; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0241291 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0241291
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRNA exonuclease 4
Genome locationCMiso1.1chr09:3446439..3447952
RNA-Seq ExpressionCmc09g0241291
SyntenyCmc09g0241291
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465602.1 PREDICTED: zinc finger protein 528-like, partial [Cucumis melo]1.2e-89100Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
        RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR

Query:  RLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNY
        RLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNY
Subjt:  RLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNY

XP_011656271.2 RNA exonuclease 4 [Cucumis sativus]2.0e-7887.27Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMN-SSQSR
        RHKCEGCFKQFNKIEHLVEHMRISFHS+HEPICSFCHKHFRYF+SLREHLIGPLPKQEC NIFNARGCKICLA+FESPL+LNLHQE CQLRP+N S ++R
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMN-SSQSR

Query:  RRLEKMENGETKG-NEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY
         RL K E+G TKG NEAVALSCTMVGAG DGSLNICVR+C+VDQNESLIFSTYVNP+LPITNYRY
Subjt:  RRLEKMENGETKG-NEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY

XP_022961916.1 RNA exonuclease 4-like [Cucurbita moschata]8.3e-6470Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
        RHKC  CF+QFNKIEHLVEHMR+SFHS+HEP CS CHKH R F+SLREHLIGP PKQECNN+F  RGCKICLAIFESP  L LHQERCQLR  NSSQ   
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR

Query:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR
        R   M        +NG  + +EAVAL+C MVG G DGSL+IC R+CL+D+NE++IFSTYVNP+LPITNYR
Subjt:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR

XP_022990586.1 RNA exonuclease 4-like [Cucurbita maxima]1.1e-6370Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
        RHKC  CF+QFNKIEHLVEHMR+SFHS+HEP CS CHKH R F+SLREHLIGPLPKQECNNIF  RGCKICLAIFESP  L LHQERCQLR  N SQ   
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR

Query:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR
        R   M        +NG  + +EAVAL+C MVG G DGSL+IC R+CL+D+ E++IFSTYVNP+LPITNYR
Subjt:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR

XP_023543310.1 RNA exonuclease 4-like [Cucurbita pepo subsp. pepo]2.0e-6571.18Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
        RHKC  CF+QFNKIEHLVEHMR+SFHS+HEP CS CHKH R F+SLREHLIGPLPKQECNNIF  RGCKICLAIFESP  L LHQERCQLR  NSSQ+  
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR

Query:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR
        R   M        +NG  + +EAVAL+C MVG G DGSL+IC R+CL+D+NE++IFSTYVNP+LPITNYR
Subjt:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR

TrEMBL top hitse value%identityAlignment
A0A1S3CP90 zinc finger protein 528-like5.6e-90100Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
        RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR

Query:  RLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNY
        RLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNY
Subjt:  RLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNY

A0A2P5BUR9 RNA exonuclease 44.0e-5659.54Show/hide
Query:  LGRHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQS
        L R++C  CF+QFNK+EHLVEHMR+S+HSVHEP C  C KH R F+SLREHLIGPLPKQEC NIF+ RGCK CLAIFE+   L +HQERCQL  +N+   
Subjt:  LGRHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQS

Query:  RRRLE-------KMEN-GETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY
         R           M+N G  +G++ VAL+C MVG G DGSL++C R+CL+D+NE++IF TYV P++P+TNYRY
Subjt:  RRRLE-------KMEN-GETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY

A0A2P5C596 RNA exonuclease 41.8e-5660.12Show/hide
Query:  LGRHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQS
        L R++C  CF+QFNK+EHLVEHMR+S+HSVHEP C  C KH R F+SLREHLIGPLPKQEC NIF+ RGCK CLAIFES   L +HQERCQL  +N+   
Subjt:  LGRHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQS

Query:  RRRLE-------KMEN-GETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY
         R           M+N G  +G++ VAL+C MVG G DGSL++C R+CL+D+NE++IF TYV P++P+TNYRY
Subjt:  RRRLE-------KMEN-GETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY

A0A6J1HBP2 RNA exonuclease 44.0e-6470Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
        RHKC  CF+QFNKIEHLVEHMR+SFHS+HEP CS CHKH R F+SLREHLIGP PKQECNN+F  RGCKICLAIFESP  L LHQERCQLR  NSSQ   
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR

Query:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR
        R   M        +NG  + +EAVAL+C MVG G DGSL+IC R+CL+D+NE++IFSTYVNP+LPITNYR
Subjt:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR

A0A6J1JNC8 RNA exonuclease 45.3e-6470Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
        RHKC  CF+QFNKIEHLVEHMR+SFHS+HEP CS CHKH R F+SLREHLIGPLPKQECNNIF  RGCKICLAIFESP  L LHQERCQLR  N SQ   
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR

Query:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR
        R   M        +NG  + +EAVAL+C MVG G DGSL+IC R+CL+D+ E++IFSTYVNP+LPITNYR
Subjt:  RLEKM--------ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR

SwissProt top hitse value%identityAlignment
Q6PAQ4 RNA exonuclease 44.5e-0434.85Show/hide
Query:  RRRLEKMENGETKG--NEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR
        ++R   +E  +  G   +A+AL C MVG G  G  +I  R+ +V+Q    ++  YV P+ P+T+YR
Subjt:  RRRLEKMENGETKG--NEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR

Q96NJ6 Zinc finger protein 3 homolog5.9e-0439.71Show/hide
Query:  HKCEGCFKQFNKIEHLVEHMRISFHSVHEPI-CSFCHKHFRYFDSLREHL-----IGPLPKQECNNIF
        H C+ C K FN+  HL++HMR+  HS  +P  C  C K F    SLR HL       P    EC   F
Subjt:  HKCEGCFKQFNKIEHLVEHMRISFHSVHEPI-CSFCHKHFRYFDSLREHL-----IGPLPKQECNNIF

Q9GZR2 RNA exonuclease 45.9e-0439.58Show/hide
Query:  AVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR
        A+AL C MVG G  G  ++  R+ +V+Q    ++  YV P+ P+T+YR
Subjt:  AVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYR

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein2.8e-4147.62Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGP--LPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQL---RPMNS
        RH+C  C+K FN+ EHLVEHM+IS+HS+H+P C  C KH + F+S+REHL  P  L K  C  IF  RGC +CL IFE    L  H+ +C L   RP+ +
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGP--LPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQL---RPMNS

Query:  SQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY
        S  R     +     K   A+AL C MVG G DG+++ C  +CLVD +E++IFST+V P LP+T+YR+
Subjt:  SQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY

AT2G48100.2 Exonuclease family protein2.8e-4147.62Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGP--LPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQL---RPMNS
        RH+C  C+K FN+ EHLVEHM+IS+HS+H+P C  C KH + F+S+REHL  P  L K  C  IF  RGC +CL IFE    L  H+ +C L   RP+ +
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGP--LPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQL---RPMNS

Query:  SQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY
        S  R     +     K   A+AL C MVG G DG+++ C  +CLVD +E++IFST+V P LP+T+YR+
Subjt:  SQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY

AT2G48100.3 Exonuclease family protein2.8e-4147.62Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGP--LPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQL---RPMNS
        RH+C  C+K FN+ EHLVEHM+IS+HS+H+P C  C KH + F+S+REHL  P  L K  C  IF  RGC +CL IFE    L  H+ +C L   RP+ +
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGP--LPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQL---RPMNS

Query:  SQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY
        S  R     +     K   A+AL C MVG G DG+++ C  +CLVD +E++IFST+V P LP+T+YR+
Subjt:  SQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY

AT3G27970.1 Exonuclease family protein1.2e-5253.53Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR
        R+KC  C++QFNK+EHLVEHM+IS+HS HEP C  C KH R F+SLREHLIGPLPKQEC NIF+ RGC+ C+ I ESP    +HQERCQ   +NS  + R
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRR

Query:  RL-------EKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY
                   ++   ++    VALSC MVG G DGSL++C R+C+ D+++++IF TYV PS+ +T+YRY
Subjt:  RL-------EKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY

AT5G40310.1 Exonuclease family protein1.2e-5557.06Show/hide
Query:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNS-----
        R+KC GC++QFNK EHLVEHMRIS+HSVHEP C  C+KH R FDSLREHLIGPLPKQEC NIF+ RGC+ CL I ESP    +HQERCQL  + S     
Subjt:  RHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNS-----

Query:  --SQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY
          +   R    ++   ++    VALSC MVG G DGSL++C R+C+ D++E+++F TYV P++P+TNYRY
Subjt:  --SQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAATTGGGCAGGCACAAATGTGAAGGTTGCTTCAAGCAATTCAACAAAATAGAGCACTTAGTAGAGCATATGAGAATCTCATTTCACTCAGTTCATGAACCAAT
TTGCTCCTTTTGCCACAAACACTTCAGATACTTTGATTCTCTTAGAGAACATCTTATTGGGCCATTGCCAAAGCAAGAATGCAACAACATATTCAATGCAAGAGGATGCA
AAATCTGCTTAGCCATCTTTGAGAGTCCACTCAAGCTCAACCTTCACCAAGAAAGATGTCAACTTAGGCCTATGAATTCCAGTCAAAGTAGGAGGCGTTTAGAGAAGATG
GAAAATGGTGAGACAAAAGGCAACGAAGCAGTGGCATTGAGTTGCACCATGGTGGGCGCTGGCAGGGACGGCTCGCTAAATATTTGCGTTAGGATTTGCCTTGTTGACCA
AAACGAGTCGCTCATCTTTTCTACTTATGTCAACCCATCCCTTCCCATCACAAACTATAGGTATATATATCCAATTCCTTTTTTTTTTTTTTTTTTACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAATTGGGCAGGCACAAATGTGAAGGTTGCTTCAAGCAATTCAACAAAATAGAGCACTTAGTAGAGCATATGAGAATCTCATTTCACTCAGTTCATGAACCAAT
TTGCTCCTTTTGCCACAAACACTTCAGATACTTTGATTCTCTTAGAGAACATCTTATTGGGCCATTGCCAAAGCAAGAATGCAACAACATATTCAATGCAAGAGGATGCA
AAATCTGCTTAGCCATCTTTGAGAGTCCACTCAAGCTCAACCTTCACCAAGAAAGATGTCAACTTAGGCCTATGAATTCCAGTCAAAGTAGGAGGCGTTTAGAGAAGATG
GAAAATGGTGAGACAAAAGGCAACGAAGCAGTGGCATTGAGTTGCACCATGGTGGGCGCTGGCAGGGACGGCTCGCTAAATATTTGCGTTAGGATTTGCCTTGTTGACCA
AAACGAGTCGCTCATCTTTTCTACTTATGTCAACCCATCCCTTCCCATCACAAACTATAGGTATATATATCCAATTCCTTTTTTTTTTTTTTTTTTACAATAA
Protein sequenceShow/hide protein sequence
MGKLGRHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRRRLEKM
ENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNYRYIYPIPFFFFFLQ